Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification (IEEE TMI 2024)

Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology (ICLR 2025)

[NeurIPS 2023] The Rise of AI Language Pathologists: Exploring Two-level Prompt Learning for Few-shot Weakly-supervised Whole Slide Image Classification

Multi-Scale Representation Attention based Deep Multiple Instance Learning for Gigapixel Whole Slide Image Analysis

GIANT-style WSI navigation env plus MultiPathQA eval runner. Plug in any VLM, zoom with bboxes, log trajectories, and score accuracy.

This repository contains some comprehensive approaches for the purpose of classifying breast cancer tissue using whole slide images (WSIs).

Cross-Cancer Knowledge Transfer in WSI-based Prognosis Prediction (https://arxiv.org/abs/2508.13482)

Theoretical Proportion Label Perturbation for Learning from Label Proportions in Large Bags in ECAI2024.

A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images

A Spatially-Aware Multiple Instance Learning Framework for Digital Pathology

End-to-end pipeline for paired H&E–IHC whole-slide images: registration, interactive Dash-based review, and Pix2Pix-based virtual stain translation.

SectraPlugin Histolung — Python ML pipeline for lung histology WSI analysis (Docker & PyTorch) | HES-SO student bachelor thesis project 2024

A demonstration script for analyzing cell density in whole slide images (WSIs). This repository accompanies the article published on daangeijs.nl. The demo showcases how to compute cell density in detected tumor regions using WholeSlideData and GeoPandas.

Blood Vessel Instance Segmentation in Human Kidney Histology Slides: A Repository for Comprehensive Whole-Slide Image Analysis