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Commits on Nov 25, 2015

• Show all the internal symmetry axes by default

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Commits on Nov 24, 2015

• More efficient instantaneous orientation method

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• Allow instantaneous orientation of point groups in Jmol

  lafita

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• Simplify the symmetry GUI with last bug fix

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  lafita

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Commits on Oct 26, 2015

• Conserve user parameters in SymmetryGui

  lafita

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• Set DEFAULT number of threads in MultipleMC to the available

  lafita

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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Commits on Aug 13, 2015

• Set title when displaying symmetry alignment

  lafita

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• Disallow MC optimization in parallel

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Commits on Aug 11, 2015

• Fix bug in CeSymm iteration process

  lafita

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• Make display verbose using logger

  lafita

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Commits on Aug 10, 2015

• Add a tag to identify refined symmetry alignments

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Commits on Aug 7, 2015

• Unimplement StructureAlignment in CeSymm

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• Correct parameter in combined symmetry detection

  lafita

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Commits on Aug 6, 2015

• Update versions of newer Classes

  lafita

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• Clean warnings in structure-gui module

  lafita

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• Factor out the global symmetry calculation

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  lafita

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Commits on Aug 4, 2015

• Allow non-refined result, only self-alignment

  lafita

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• Fix demo issues

  lafita

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Commits on Aug 3, 2015

• Add Demo for CeSymm

  lafita

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• Port CeSymm for internal symmetry detection code to BioJava

  lafita

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Commits on Jul 24, 2015

• Fix bug with flexible MultipleAlignments

  lafita

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Commits on Jul 23, 2015

• Remove the 3D transformations in MultipleAlignment

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Commits on Jul 22, 2015

• Calc.transform() documentation and testing

  lafita

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Commits on Jul 20, 2015

• Fix bug in jama to vecmath conversion

  lafita

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• Core length used as the the min block length

  lafita

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Commits on Jul 17, 2015

• Include getters for some Jmol member variables (frame and alignment)

  lafita

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Commits on Jul 16, 2015

• Organize MultipleAlignment code in a util package

  lafita

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• Test all String output Writer methods of MultipleAlignment

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Commits on Jul 9, 2015

• Review GUI code for MultipleAlignments

  lafita

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• Show ligands in the MultipleAlignment display

  lafita

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Commits on Jul 8, 2015

• Static methods for Jmol display methods, for consistency

  lafita

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• Merge remote-tracking branch 'main/master' into minor

  lafita

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• Save and Load MultipleAlignment through the GUI

  lafita

  committed
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• Implement XML Converter and Parser for MultipleAlignments

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