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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 631

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 240 206

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 182 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 48 46

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 11

Repositories

Showing 10 of 64 repositories
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 37 MIT 11 5 1 Updated Mar 10, 2026
  • snakemake-storage-plugin-http Public

    Snakemake storage plugin for donwloading input files from HTTP(s).

    snakemake/snakemake-storage-plugin-http’s past year of commit activity
    Python 1 MIT 4 5 5 Updated Mar 10, 2026
  • snakemake-software-deployment-plugin-conda Public

    A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

    snakemake/snakemake-software-deployment-plugin-conda’s past year of commit activity
    Python 2 0 1 2 Updated Mar 10, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,719 MIT 631 1,185 (1 issue needs help) 104 Updated Mar 9, 2026
  • snakemake-plugin-catalog Public

    An automatically updated catalog of Snakemake plugins and their documentation

    snakemake/snakemake-plugin-catalog’s past year of commit activity
    Python 3 MIT 10 1 4 Updated Mar 10, 2026
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 10, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 48 MIT 46 40 3 Updated Mar 9, 2026
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 8 MIT 2 2 3 Updated Mar 9, 2026
  • snakemake-software-deployment-plugin-container Public

    Run snakemake within a rootless container

    snakemake/snakemake-software-deployment-plugin-container’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Mar 9, 2026
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 9, 2026
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