Commits

Breadcrumbs

History for

onmaster

User selector

All users

All time

Commit History

Commits on Nov 30, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for 6171169
  andreasprlic

  committed
  6171169

  Copy full SHA for 6171169

• [maven-release-plugin] prepare release biojava-3.0.5

  Show description for 9cd0a28
  andreasprlic

  committed
  9cd0a28

  Copy full SHA for 9cd0a28

Commits on Jul 31, 2012

• workaround for a problem that seems openjdk specific

  Show description for 0c44914
  andreasprlic

  committed
  0c44914

  Copy full SHA for 0c44914

• adding javadoc

  Show description for 6592595
  andreasprlic

  committed
  6592595

  Copy full SHA for 6592595

Commits on Jul 23, 2012

• PDBWW-4789 entityView is now linked to structure summary page!

  Show description for a47a7d2
  andreasprlic

  committed
  a47a7d2

  Copy full SHA for a47a7d2

Commits on Jun 15, 2012

• now serializable

  Show description for 2eb5a4e
  andreasprlic

  committed
  2eb5a4e

  Copy full SHA for 2eb5a4e

• now serializable

  Show description for 43170a8
  andreasprlic

  committed
  43170a8

  Copy full SHA for 43170a8

Commits on May 30, 2012

• switching the json library according to request from Olivier Sallou

  Show description for be3f49a
  andreasprlic

  committed
  be3f49a

  Copy full SHA for be3f49a

Commits on May 22, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for c3a9b6c
  andreasprlic

  committed
  c3a9b6c

  Copy full SHA for c3a9b6c

• [maven-release-plugin] prepare release biojava-3.0.4

  Show description for 2405479
  andreasprlic

  committed
  2405479

  Copy full SHA for 2405479

Commits on Mar 16, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for 80b45aa
  andreasprlic

  committed
  80b45aa

  Copy full SHA for 80b45aa

• [maven-release-plugin] prepare release biojava-3.0.3

  Show description for e15051b
  andreasprlic

  committed
  e15051b

  Copy full SHA for e15051b

Commits on Feb 11, 2012

• NCBIQBlastService replaced with the new implementation.

  Show description for e3a8dcd
  grimsa

  committed
  e3a8dcd

  Copy full SHA for e3a8dcd

Commits on Jan 12, 2012

• Reversed conditions in if statement so null check was first. Prevents NPE.

  Show description for af59557
  rthornton

  committed
  af59557

  Copy full SHA for af59557

Commits on Jan 9, 2012

• Alternate implementation of NCBIQBlastService

  Show description for 3e8d89a
  grimsa

  committed
  3e8d89a

  Copy full SHA for 3e8d89a

Commits on Dec 20, 2011

• adding @since 3.0.3 annotations

  Show description for cc4a4d5
  andreasprlic

  committed
  cc4a4d5

  Copy full SHA for cc4a4d5

• now dependent on org.json for the RESTful Hmmer API

  Show description for 5ac7051
  andreasprlic

  committed
  5ac7051

  Copy full SHA for 5ac7051

• Adding a new client for submitting ProteinSequences to the Hmmer3 web service and retrieving Pfam domain annotations

  Show description for 16503b3
  andreasprlic

  committed
  16503b3

  Copy full SHA for 16503b3

Commits on Dec 12, 2011

• Included some error catching mechanisms into NCBIQBlastService to intercept QBlast's error messages.

  Show description for bc4d230
  foisys

  committed
  bc4d230

  Copy full SHA for bc4d230

Commits on Dec 8, 2011

• Fixing PAM250 default values

  Show description for f94a588
  foisys

  committed
  f94a588

  Copy full SHA for f94a588

• Major mods in NCBIQBlastAlignmentProperties: it is now responsible for basic sanity checks of these properties instead of NCBIQBlastService. Also added get/set methods for blastp matrix selection a…

  Show description for 4e1c0d2
  foisys

  committed
  4e1c0d2

  Copy full SHA for 4e1c0d2

Commits on Dec 2, 2011

• Adjustments to getBlastFromPOsition and getBlastToPosition

  Show description for 114e608
  foisys

  committed
  114e608

  Copy full SHA for 114e608

• using MEGABLAST should now work in setBlastProgram

  Show description for 93ed778
  foisys

  committed
  93ed778

  Copy full SHA for 93ed778

• added getBlastWordSize/setBlastWordSize to use WORD_SIZE values for BLAST requests

  Show description for 5c894c6
  foisys

  committed
  5c894c6

  Copy full SHA for 5c894c6

• added getBlastExpect/setBlastExpect to use EXPECT values for BLAST requests

  Show description for 0205057
  foisys

  committed
  0205057

  Copy full SHA for 0205057

Commits on Sep 2, 2011

• [maven-release-plugin] prepare for next development iteration

  Show description for 895585f
  andreasprlic

  committed
  895585f

  Copy full SHA for 895585f

• [maven-release-plugin] prepare release biojava-3.0.2

  Show description for 3cad094
  andreasprlic

  committed
  3cad094

  Copy full SHA for 3cad094

Commits on Aug 30, 2011

• Simple comment addition

  Show description for 19d2a98
  foisys

  committed
  19d2a98

  Copy full SHA for 19d2a98

• Commented out code removed, cleaning the mess...

  Show description for 9412c78
  foisys

  committed
  9412c78

  Copy full SHA for 9412c78

Commits on May 26, 2011

• Fix a problem that appeared in the NCBI QBlast service where using the FORMAT_OBJECT=ALIGNMENT tag in the URL would return no results from the getAlignementResults method...

  Show description for 927a8f9
  foisys

  committed
  927a8f9

  Copy full SHA for 927a8f9

Commits on Feb 21, 2011

• New methods to add getting/setting EXPECT and WORD_SIZE parameters

  Show description for 539e2c1
  foisys

  committed
  539e2c1

  Copy full SHA for 539e2c1

• More bug fixes: checking for null program or null database now works with new code

  Show description for 6f6fd1d
  foisys

  committed
  6f6fd1d

  Copy full SHA for 6f6fd1d

• Bug fixes

  Show description for 5911360
  foisys

  committed
  5911360

  Copy full SHA for 5911360

Commits on Feb 14, 2011

• [maven-release-plugin] prepare for next development iteration

  Show description for e6e4600
  andreasprlic

  committed
  e6e4600

  Copy full SHA for e6e4600

• [maven-release-plugin] prepare release biojava-3.0.1

  Show description for 0091b99
  andreasprlic

  committed
  0091b99

  Copy full SHA for 0091b99

Pagination

Previous

Next