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Commits on Oct 26, 2017

• Minor bugfix and some new tests for it

  josemduarte

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Commits on Oct 18, 2017

• [maven-release-plugin] prepare for next development iteration

  josemduarte

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  a7216ef

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• [maven-release-plugin] prepare release biojava-5.0.0-alpha13

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  3de5254

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• [maven-release-plugin] prepare release biojava-5.0.0-alpha13

  josemduarte

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  52e6a05

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

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  e375195

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• [maven-release-plugin] prepare release biojava-5.0.0-alpha13

  josemduarte

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  8b05a31

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• Merge pull request #706 from josemduarte/issue704

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  josemduarte

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Commits on Oct 17, 2017

• ignore chains that do not have representative atoms, e.g. 4LKE chain G.

  valasatava

  committed
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Commits on Oct 16, 2017

• Merge pull request #710 from josemduarte/issue708

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  josemduarte

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Commits on Oct 11, 2017

• Now identical clustering performed on 95% identical sequences

  josemduarte

  committed
  730d6b4

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Commits on Oct 10, 2017

• Better fix for null subunits as advised by @lafita

  josemduarte

  committed
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Commits on Oct 9, 2017

• A fix for #708

  josemduarte

  committed
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• Small fix for cloning

  josemduarte

  committed
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Commits on Oct 7, 2017

• several fixes for biological assemblies calculations

  valasatava

  committed
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Commits on Oct 5, 2017

• A new dome for quat symmetry detection

  josemduarte

  committed
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Commits on Oct 4, 2017

• New bioassembly demo

  josemduarte

  committed
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Commits on Sep 8, 2017

• Making it clear that the soft memory cache is a singleton

  josemduarte

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  2b1860b

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• Fix for new tests so that they don't pollute other tests

  josemduarte

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• Solving #704 and adding some tests for #703

  josemduarte

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• Fixing phosphosite urls and changing default url timeout to 30s

  josemduarte

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Commits on Aug 9, 2017

• fixed minor issue with lack of this keyword, re-ran tests

  

  luke czapla

  committed
  9a38510

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• made max values non-static and created final DEFAULT constants

  

  luke czapla

  committed
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• Renamed MaxStagger (etc.) to maxStagger (etc.)

  

  luke czapla

  committed
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• Subclasses not serializable

  

  luke czapla

  committed
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Commits on Aug 6, 2017

• Structure object unmarked as transient for serialization

  

  luke czapla

  committed
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Commits on Aug 5, 2017

• Merge remote-tracking branch 'upstream/master'

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  luke czapla

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Commits on Aug 3, 2017

• Merge branch 'master' of github.com:biojava/biojava into serialize

  lafita

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Commits on Aug 2, 2017

• Fixing test after PDB v5 remediation

  josemduarte

  committed
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Commits on Jul 31, 2017

• getters and setters all have full sentence JavaDoc

  

  luke czapla

  committed
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• removed added * import

  

  luke czapla

  committed
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• Full sentence revision of all JavaDoc and addition of separate error checking method

  

  luke czapla

  authored and

  luke czapla

  committed
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Commits on Jul 28, 2017

• and the other files

  

  luke czapla

  authored and

  luke czapla

  committed
  4908343

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• fixed nomenclature for constants

  

  luke czapla

  authored and

  luke czapla

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• Add a more complete check to structure serialization test

  lafita

  committed
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