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<h1>Source code for matplotlib.mlab</h1><div class="highlight"><pre>
<span></span><span class="sd">"""</span>
<span class="sd">Numerical python functions written for compatibility with MATLAB</span>
<span class="sd">commands with the same names. Most numerical python functions can be found in</span>
<span class="sd">the `numpy` and `scipy` libraries. What remains here is code for performing</span>
<span class="sd">spectral computations.</span>
<span class="sd">Spectral functions</span>
<span class="sd">-------------------</span>
<span class="sd">`cohere`</span>
<span class="sd"> Coherence (normalized cross spectral density)</span>
<span class="sd">`csd`</span>
<span class="sd"> Cross spectral density using Welch's average periodogram</span>
<span class="sd">`detrend`</span>
<span class="sd"> Remove the mean or best fit line from an array</span>
<span class="sd">`psd`</span>
<span class="sd"> Power spectral density using Welch's average periodogram</span>
<span class="sd">`specgram`</span>
<span class="sd"> Spectrogram (spectrum over segments of time)</span>
<span class="sd">`complex_spectrum`</span>
<span class="sd"> Return the complex-valued frequency spectrum of a signal</span>
<span class="sd">`magnitude_spectrum`</span>
<span class="sd"> Return the magnitude of the frequency spectrum of a signal</span>
<span class="sd">`angle_spectrum`</span>
<span class="sd"> Return the angle (wrapped phase) of the frequency spectrum of a signal</span>
<span class="sd">`phase_spectrum`</span>
<span class="sd"> Return the phase (unwrapped angle) of the frequency spectrum of a signal</span>
<span class="sd">`detrend_mean`</span>
<span class="sd"> Remove the mean from a line.</span>
<span class="sd">`detrend_linear`</span>
<span class="sd"> Remove the best fit line from a line.</span>
<span class="sd">`detrend_none`</span>
<span class="sd"> Return the original line.</span>
<span class="sd">`stride_windows`</span>
<span class="sd"> Get all windows in an array in a memory-efficient manner</span>
<span class="sd">`stride_repeat`</span>
<span class="sd"> Repeat an array in a memory-efficient manner</span>
<span class="sd">`apply_window`</span>
<span class="sd"> Apply a window along a given axis</span>
<span class="sd">"""</span>
<span class="kn">import</span> <span class="nn">csv</span>
<span class="kn">import</span> <span class="nn">inspect</span>
<span class="kn">from</span> <span class="nn">numbers</span> <span class="kn">import</span> <span class="n">Number</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
<span class="kn">import</span> <span class="nn">matplotlib.cbook</span> <span class="k">as</span> <span class="nn">cbook</span>
<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">docstring</span>
<div class="viewcode-block" id="window_hanning"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.window_hanning">[docs]</a><span class="k">def</span> <span class="nf">window_hanning</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x times the hanning window of len(x).</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> window_none : Another window algorithm.</span>
<span class="sd"> '''</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">hanning</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">))</span><span class="o">*</span><span class="n">x</span></div>
<div class="viewcode-block" id="window_none"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.window_none">[docs]</a><span class="k">def</span> <span class="nf">window_none</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> No window function; simply return x.</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> window_hanning : Another window algorithm.</span>
<span class="sd"> '''</span>
<span class="k">return</span> <span class="n">x</span></div>
<div class="viewcode-block" id="apply_window"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.apply_window">[docs]</a><span class="nd">@cbook</span><span class="o">.</span><span class="n">deprecated</span><span class="p">(</span><span class="s2">"3.2"</span><span class="p">)</span>
<span class="k">def</span> <span class="nf">apply_window</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">window</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">return_window</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Apply the given window to the given 1D or 2D array along the given axis.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1D or 2D array or sequence</span>
<span class="sd"> Array or sequence containing the data.</span>
<span class="sd"> window : function or array.</span>
<span class="sd"> Either a function to generate a window or an array with length</span>
<span class="sd"> *x*.shape[*axis*]</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis over which to do the repetition.</span>
<span class="sd"> Must be 0 or 1. The default is 0</span>
<span class="sd"> return_window : bool</span>
<span class="sd"> If true, also return the 1D values of the window that was applied</span>
<span class="sd"> '''</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o"><</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">></span> <span class="mi">2</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'only 1D or 2D arrays can be used'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">axis</span><span class="o">+</span><span class="mi">1</span> <span class="o">></span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'axis(=</span><span class="si">%s</span><span class="s1">) out of bounds'</span> <span class="o">%</span> <span class="n">axis</span><span class="p">)</span>
<span class="n">xshape</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
<span class="n">xshapetarg</span> <span class="o">=</span> <span class="n">xshape</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="n">axis</span><span class="p">)</span>
<span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">iterable</span><span class="p">(</span><span class="n">window</span><span class="p">):</span>
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">window</span><span class="p">)</span> <span class="o">!=</span> <span class="n">xshapetarg</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'The len(window) must be the same as the shape '</span>
<span class="s1">'of x for the chosen axis'</span><span class="p">)</span>
<span class="n">windowVals</span> <span class="o">=</span> <span class="n">window</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">windowVals</span> <span class="o">=</span> <span class="n">window</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">xshapetarg</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">x</span><span class="o">.</span><span class="n">dtype</span><span class="p">))</span>
<span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">if</span> <span class="n">return_window</span><span class="p">:</span>
<span class="k">return</span> <span class="n">windowVals</span> <span class="o">*</span> <span class="n">x</span><span class="p">,</span> <span class="n">windowVals</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">return</span> <span class="n">windowVals</span> <span class="o">*</span> <span class="n">x</span>
<span class="n">xshapeother</span> <span class="o">=</span> <span class="n">xshape</span><span class="o">.</span><span class="n">pop</span><span class="p">()</span>
<span class="n">otheraxis</span> <span class="o">=</span> <span class="p">(</span><span class="n">axis</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span> <span class="o">%</span> <span class="mi">2</span>
<span class="n">windowValsRep</span> <span class="o">=</span> <span class="n">stride_repeat</span><span class="p">(</span><span class="n">windowVals</span><span class="p">,</span> <span class="n">xshapeother</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">otheraxis</span><span class="p">)</span>
<span class="k">if</span> <span class="n">return_window</span><span class="p">:</span>
<span class="k">return</span> <span class="n">windowValsRep</span> <span class="o">*</span> <span class="n">x</span><span class="p">,</span> <span class="n">windowVals</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">return</span> <span class="n">windowValsRep</span> <span class="o">*</span> <span class="n">x</span></div>
<div class="viewcode-block" id="detrend"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.detrend">[docs]</a><span class="k">def</span> <span class="nf">detrend</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x with its trend removed.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : array or sequence</span>
<span class="sd"> Array or sequence containing the data.</span>
<span class="sd"> key : {'default', 'constant', 'mean', 'linear', 'none'} or function</span>
<span class="sd"> Specifies the detrend algorithm to use. 'default' is 'mean', which is</span>
<span class="sd"> the same as `detrend_mean`. 'constant' is the same. 'linear' is</span>
<span class="sd"> the same as `detrend_linear`. 'none' is the same as</span>
<span class="sd"> `detrend_none`. The default is 'mean'. See the corresponding</span>
<span class="sd"> functions for more details regarding the algorithms. Can also be a</span>
<span class="sd"> function that carries out the detrend operation.</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which to do the detrending.</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> detrend_mean : Implementation of the 'mean' algorithm.</span>
<span class="sd"> detrend_linear : Implementation of the 'linear' algorithm.</span>
<span class="sd"> detrend_none : Implementation of the 'none' algorithm.</span>
<span class="sd"> '''</span>
<span class="k">if</span> <span class="n">key</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">key</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">'constant'</span><span class="p">,</span> <span class="s1">'mean'</span><span class="p">,</span> <span class="s1">'default'</span><span class="p">]:</span>
<span class="k">return</span> <span class="n">detrend</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="n">detrend_mean</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">)</span>
<span class="k">elif</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">'linear'</span><span class="p">:</span>
<span class="k">return</span> <span class="n">detrend</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="n">detrend_linear</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">)</span>
<span class="k">elif</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">'none'</span><span class="p">:</span>
<span class="k">return</span> <span class="n">detrend</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="n">detrend_none</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">)</span>
<span class="k">elif</span> <span class="n">callable</span><span class="p">(</span><span class="n">key</span><span class="p">):</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="n">axis</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">axis</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">></span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s1">'axis(=</span><span class="si">{axis}</span><span class="s1">) out of bounds'</span><span class="p">)</span>
<span class="k">if</span> <span class="p">(</span><span class="n">axis</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">0</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="ow">not</span> <span class="n">axis</span> <span class="ow">and</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">):</span>
<span class="k">return</span> <span class="n">key</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="c1"># try to use the 'axis' argument if the function supports it,</span>
<span class="c1"># otherwise use apply_along_axis to do it</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">return</span> <span class="n">key</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">apply_along_axis</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">,</span> <span class="n">arr</span><span class="o">=</span><span class="n">x</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
<span class="sa">f</span><span class="s2">"Unknown value for key: </span><span class="si">{key!r}</span><span class="s2">, must be one of: 'default', "</span>
<span class="sa">f</span><span class="s2">"'constant', 'mean', 'linear', or a function"</span><span class="p">)</span></div>
<div class="viewcode-block" id="demean"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.demean">[docs]</a><span class="nd">@cbook</span><span class="o">.</span><span class="n">deprecated</span><span class="p">(</span><span class="s2">"3.1"</span><span class="p">,</span> <span class="n">alternative</span><span class="o">=</span><span class="s2">"detrend_mean"</span><span class="p">)</span>
<span class="k">def</span> <span class="nf">demean</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x minus its mean along the specified axis.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> Can have any dimensionality</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which to take the mean. See numpy.mean for a</span>
<span class="sd"> description of this argument.</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> detrend_mean : Same as `demean` except for the default *axis*.</span>
<span class="sd"> '''</span>
<span class="k">return</span> <span class="n">detrend_mean</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="n">axis</span><span class="p">)</span></div>
<div class="viewcode-block" id="detrend_mean"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.detrend_mean">[docs]</a><span class="k">def</span> <span class="nf">detrend_mean</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x minus the mean(x).</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> Can have any dimensionality</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which to take the mean. See numpy.mean for a</span>
<span class="sd"> description of this argument.</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> detrend_linear : Another detrend algorithm.</span>
<span class="sd"> detrend_none : Another detrend algorithm.</span>
<span class="sd"> detrend : A wrapper around all the detrend algorithms.</span>
<span class="sd"> '''</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="n">axis</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">axis</span><span class="o">+</span><span class="mi">1</span> <span class="o">></span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'axis(=</span><span class="si">%s</span><span class="s1">) out of bounds'</span> <span class="o">%</span> <span class="n">axis</span><span class="p">)</span>
<span class="k">return</span> <span class="n">x</span> <span class="o">-</span> <span class="n">x</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">axis</span><span class="p">,</span> <span class="n">keepdims</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span></div>
<div class="viewcode-block" id="detrend_none"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.detrend_none">[docs]</a><span class="k">def</span> <span class="nf">detrend_none</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x: no detrending.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : any object</span>
<span class="sd"> An object containing the data</span>
<span class="sd"> axis : integer</span>
<span class="sd"> This parameter is ignored.</span>
<span class="sd"> It is included for compatibility with detrend_mean</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> detrend_mean : Another detrend algorithm.</span>
<span class="sd"> detrend_linear : Another detrend algorithm.</span>
<span class="sd"> detrend : A wrapper around all the detrend algorithms.</span>
<span class="sd"> '''</span>
<span class="k">return</span> <span class="n">x</span></div>
<div class="viewcode-block" id="detrend_linear"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.detrend_linear">[docs]</a><span class="k">def</span> <span class="nf">detrend_linear</span><span class="p">(</span><span class="n">y</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Return x minus best fit line; 'linear' detrending.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> y : 0-D or 1-D array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which to take the mean. See numpy.mean for a</span>
<span class="sd"> description of this argument.</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> detrend_mean : Another detrend algorithm.</span>
<span class="sd"> detrend_none : Another detrend algorithm.</span>
<span class="sd"> detrend : A wrapper around all the detrend algorithms.</span>
<span class="sd"> '''</span>
<span class="c1"># This is faster than an algorithm based on linalg.lstsq.</span>
<span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
<span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">ndim</span> <span class="o">></span> <span class="mi">1</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'y cannot have ndim > 1'</span><span class="p">)</span>
<span class="c1"># short-circuit 0-D array.</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">y</span><span class="o">.</span><span class="n">ndim</span><span class="p">:</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="mf">0.</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">y</span><span class="o">.</span><span class="n">dtype</span><span class="p">)</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">size</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="n">C</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cov</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">bias</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="n">b</span> <span class="o">=</span> <span class="n">C</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span><span class="o">/</span><span class="n">C</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span>
<span class="n">a</span> <span class="o">=</span> <span class="n">y</span><span class="o">.</span><span class="n">mean</span><span class="p">()</span> <span class="o">-</span> <span class="n">b</span><span class="o">*</span><span class="n">x</span><span class="o">.</span><span class="n">mean</span><span class="p">()</span>
<span class="k">return</span> <span class="n">y</span> <span class="o">-</span> <span class="p">(</span><span class="n">b</span><span class="o">*</span><span class="n">x</span> <span class="o">+</span> <span class="n">a</span><span class="p">)</span></div>
<div class="viewcode-block" id="stride_windows"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.stride_windows">[docs]</a><span class="k">def</span> <span class="nf">stride_windows</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">noverlap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Get all windows of x with length n as a single array,</span>
<span class="sd"> using strides to avoid data duplication.</span>
<span class="sd"> .. warning::</span>
<span class="sd"> It is not safe to write to the output array. Multiple</span>
<span class="sd"> elements may point to the same piece of memory,</span>
<span class="sd"> so modifying one value may change others.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1D array or sequence</span>
<span class="sd"> Array or sequence containing the data.</span>
<span class="sd"> n : integer</span>
<span class="sd"> The number of data points in each window.</span>
<span class="sd"> noverlap : integer</span>
<span class="sd"> The overlap between adjacent windows.</span>
<span class="sd"> Default is 0 (no overlap)</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which the windows will run.</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> `stackoverflow: Rolling window for 1D arrays in Numpy?</span>
<span class="sd"> <http://stackoverflow.com/a/6811241>`_</span>
<span class="sd"> `stackoverflow: Using strides for an efficient moving average filter</span>
<span class="sd"> <http://stackoverflow.com/a/4947453>`_</span>
<span class="sd"> '''</span>
<span class="k">if</span> <span class="n">noverlap</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">noverlap</span> <span class="o">=</span> <span class="mi">0</span>
<span class="k">if</span> <span class="n">noverlap</span> <span class="o">>=</span> <span class="n">n</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'noverlap must be less than n'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">n</span> <span class="o"><</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'n cannot be less than 1'</span><span class="p">)</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'only 1-dimensional arrays can be used'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">n</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noverlap</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="k">if</span> <span class="n">axis</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="k">return</span> <span class="n">x</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">return</span> <span class="n">x</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">newaxis</span><span class="p">]</span><span class="o">.</span><span class="n">transpose</span><span class="p">()</span>
<span class="k">if</span> <span class="n">n</span> <span class="o">></span> <span class="n">x</span><span class="o">.</span><span class="n">size</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'n cannot be greater than the length of x'</span><span class="p">)</span>
<span class="c1"># np.lib.stride_tricks.as_strided easily leads to memory corruption for</span>
<span class="c1"># non integer shape and strides, i.e. noverlap or n. See #3845.</span>
<span class="n">noverlap</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">noverlap</span><span class="p">)</span>
<span class="n">n</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">n</span><span class="p">)</span>
<span class="n">step</span> <span class="o">=</span> <span class="n">n</span> <span class="o">-</span> <span class="n">noverlap</span>
<span class="k">if</span> <span class="n">axis</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">noverlap</span><span class="p">)</span><span class="o">//</span><span class="n">step</span><span class="p">)</span>
<span class="n">strides</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">step</span><span class="o">*</span><span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">shape</span> <span class="o">=</span> <span class="p">((</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">noverlap</span><span class="p">)</span><span class="o">//</span><span class="n">step</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
<span class="n">strides</span> <span class="o">=</span> <span class="p">(</span><span class="n">step</span><span class="o">*</span><span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">lib</span><span class="o">.</span><span class="n">stride_tricks</span><span class="o">.</span><span class="n">as_strided</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="n">shape</span><span class="p">,</span> <span class="n">strides</span><span class="o">=</span><span class="n">strides</span><span class="p">)</span></div>
<div class="viewcode-block" id="stride_repeat"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.stride_repeat">[docs]</a><span class="nd">@cbook</span><span class="o">.</span><span class="n">deprecated</span><span class="p">(</span><span class="s2">"3.2"</span><span class="p">)</span>
<span class="k">def</span> <span class="nf">stride_repeat</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> Repeat the values in an array in a memory-efficient manner. Array x is</span>
<span class="sd"> stacked vertically n times.</span>
<span class="sd"> .. warning::</span>
<span class="sd"> It is not safe to write to the output array. Multiple</span>
<span class="sd"> elements may point to the same piece of memory, so</span>
<span class="sd"> modifying one value may change others.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1D array or sequence</span>
<span class="sd"> Array or sequence containing the data.</span>
<span class="sd"> n : integer</span>
<span class="sd"> The number of time to repeat the array.</span>
<span class="sd"> axis : integer</span>
<span class="sd"> The axis along which the data will run.</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> `stackoverflow: Repeat NumPy array without replicating data?</span>
<span class="sd"> <http://stackoverflow.com/a/5568169>`_</span>
<span class="sd"> '''</span>
<span class="k">if</span> <span class="n">axis</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'axis must be 0 or 1'</span><span class="p">)</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'only 1-dimensional arrays can be used'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">n</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">if</span> <span class="n">axis</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">atleast_2d</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">atleast_2d</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">T</span>
<span class="k">if</span> <span class="n">n</span> <span class="o"><</span> <span class="mi">1</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'n cannot be less than 1'</span><span class="p">)</span>
<span class="c1"># np.lib.stride_tricks.as_strided easily leads to memory corruption for</span>
<span class="c1"># non integer shape and strides, i.e. n. See #3845.</span>
<span class="n">n</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">n</span><span class="p">)</span>
<span class="k">if</span> <span class="n">axis</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">size</span><span class="p">)</span>
<span class="n">strides</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">size</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
<span class="n">strides</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">strides</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">)</span>
<span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">lib</span><span class="o">.</span><span class="n">stride_tricks</span><span class="o">.</span><span class="n">as_strided</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="n">shape</span><span class="p">,</span> <span class="n">strides</span><span class="o">=</span><span class="n">strides</span><span class="p">)</span></div>
<span class="k">def</span> <span class="nf">_spectral_helper</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">detrend_func</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">noverlap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">scale_by_freq</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> This is a helper function that implements the commonality between the</span>
<span class="sd"> psd, csd, spectrogram and complex, magnitude, angle, and phase spectrums.</span>
<span class="sd"> It is *NOT* meant to be used outside of mlab and may change at any time.</span>
<span class="sd"> '''</span>
<span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="c1"># if y is None use x for y</span>
<span class="n">same_data</span> <span class="o">=</span> <span class="kc">True</span>
<span class="k">else</span><span class="p">:</span>
<span class="c1"># The checks for if y is x are so that we can use the same function to</span>
<span class="c1"># implement the core of psd(), csd(), and spectrogram() without doing</span>
<span class="c1"># extra calculations. We return the unaveraged Pxy, freqs, and t.</span>
<span class="n">same_data</span> <span class="o">=</span> <span class="n">y</span> <span class="ow">is</span> <span class="n">x</span>
<span class="k">if</span> <span class="n">Fs</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">Fs</span> <span class="o">=</span> <span class="mi">2</span>
<span class="k">if</span> <span class="n">noverlap</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">noverlap</span> <span class="o">=</span> <span class="mi">0</span>
<span class="k">if</span> <span class="n">detrend_func</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">detrend_func</span> <span class="o">=</span> <span class="n">detrend_none</span>
<span class="k">if</span> <span class="n">window</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">window</span> <span class="o">=</span> <span class="n">window_hanning</span>
<span class="c1"># if NFFT is set to None use the whole signal</span>
<span class="k">if</span> <span class="n">NFFT</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">NFFT</span> <span class="o">=</span> <span class="mi">256</span>
<span class="k">if</span> <span class="n">mode</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'default'</span><span class="p">:</span>
<span class="n">mode</span> <span class="o">=</span> <span class="s1">'psd'</span>
<span class="n">cbook</span><span class="o">.</span><span class="n">_check_in_list</span><span class="p">(</span>
<span class="p">[</span><span class="s1">'default'</span><span class="p">,</span> <span class="s1">'psd'</span><span class="p">,</span> <span class="s1">'complex'</span><span class="p">,</span> <span class="s1">'magnitude'</span><span class="p">,</span> <span class="s1">'angle'</span><span class="p">,</span> <span class="s1">'phase'</span><span class="p">],</span>
<span class="n">mode</span><span class="o">=</span><span class="n">mode</span><span class="p">)</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">same_data</span> <span class="ow">and</span> <span class="n">mode</span> <span class="o">!=</span> <span class="s1">'psd'</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"x and y must be equal if mode is not 'psd'"</span><span class="p">)</span>
<span class="c1"># Make sure we're dealing with a numpy array. If y and x were the same</span>
<span class="c1"># object to start with, keep them that way</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">same_data</span><span class="p">:</span>
<span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
<span class="k">if</span> <span class="n">sides</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">sides</span> <span class="o">==</span> <span class="s1">'default'</span><span class="p">:</span>
<span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">iscomplexobj</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
<span class="n">sides</span> <span class="o">=</span> <span class="s1">'twosided'</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">sides</span> <span class="o">=</span> <span class="s1">'onesided'</span>
<span class="n">cbook</span><span class="o">.</span><span class="n">_check_in_list</span><span class="p">([</span><span class="s1">'default'</span><span class="p">,</span> <span class="s1">'onesided'</span><span class="p">,</span> <span class="s1">'twosided'</span><span class="p">],</span> <span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">)</span>
<span class="c1"># zero pad x and y up to NFFT if they are shorter than NFFT</span>
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="o"><</span> <span class="n">NFFT</span><span class="p">:</span>
<span class="n">n</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">resize</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">NFFT</span><span class="p">)</span>
<span class="n">x</span><span class="p">[</span><span class="n">n</span><span class="p">:]</span> <span class="o">=</span> <span class="mi">0</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">same_data</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">y</span><span class="p">)</span> <span class="o"><</span> <span class="n">NFFT</span><span class="p">:</span>
<span class="n">n</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
<span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">resize</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">NFFT</span><span class="p">)</span>
<span class="n">y</span><span class="p">[</span><span class="n">n</span><span class="p">:]</span> <span class="o">=</span> <span class="mi">0</span>
<span class="k">if</span> <span class="n">pad_to</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">pad_to</span> <span class="o">=</span> <span class="n">NFFT</span>
<span class="k">if</span> <span class="n">mode</span> <span class="o">!=</span> <span class="s1">'psd'</span><span class="p">:</span>
<span class="n">scale_by_freq</span> <span class="o">=</span> <span class="kc">False</span>
<span class="k">elif</span> <span class="n">scale_by_freq</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">scale_by_freq</span> <span class="o">=</span> <span class="kc">True</span>
<span class="c1"># For real x, ignore the negative frequencies unless told otherwise</span>
<span class="k">if</span> <span class="n">sides</span> <span class="o">==</span> <span class="s1">'twosided'</span><span class="p">:</span>
<span class="n">numFreqs</span> <span class="o">=</span> <span class="n">pad_to</span>
<span class="k">if</span> <span class="n">pad_to</span> <span class="o">%</span> <span class="mi">2</span><span class="p">:</span>
<span class="n">freqcenter</span> <span class="o">=</span> <span class="p">(</span><span class="n">pad_to</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span><span class="o">//</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">freqcenter</span> <span class="o">=</span> <span class="n">pad_to</span><span class="o">//</span><span class="mi">2</span>
<span class="n">scaling_factor</span> <span class="o">=</span> <span class="mf">1.</span>
<span class="k">elif</span> <span class="n">sides</span> <span class="o">==</span> <span class="s1">'onesided'</span><span class="p">:</span>
<span class="k">if</span> <span class="n">pad_to</span> <span class="o">%</span> <span class="mi">2</span><span class="p">:</span>
<span class="n">numFreqs</span> <span class="o">=</span> <span class="p">(</span><span class="n">pad_to</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span><span class="o">//</span><span class="mi">2</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">numFreqs</span> <span class="o">=</span> <span class="n">pad_to</span><span class="o">//</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span>
<span class="n">scaling_factor</span> <span class="o">=</span> <span class="mf">2.</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">iterable</span><span class="p">(</span><span class="n">window</span><span class="p">):</span>
<span class="n">window</span> <span class="o">=</span> <span class="n">window</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">NFFT</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">dtype</span><span class="p">))</span>
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">window</span><span class="p">)</span> <span class="o">!=</span> <span class="n">NFFT</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
<span class="s2">"The window length must match the data's first dimension"</span><span class="p">)</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">stride_windows</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">NFFT</span><span class="p">,</span> <span class="n">noverlap</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">detrend</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">detrend_func</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">result</span> <span class="o">*</span> <span class="n">window</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">fft</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">n</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)[:</span><span class="n">numFreqs</span><span class="p">,</span> <span class="p">:]</span>
<span class="n">freqs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">fftfreq</span><span class="p">(</span><span class="n">pad_to</span><span class="p">,</span> <span class="mi">1</span><span class="o">/</span><span class="n">Fs</span><span class="p">)[:</span><span class="n">numFreqs</span><span class="p">]</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">same_data</span><span class="p">:</span>
<span class="c1"># if same_data is False, mode must be 'psd'</span>
<span class="n">resultY</span> <span class="o">=</span> <span class="n">stride_windows</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">NFFT</span><span class="p">,</span> <span class="n">noverlap</span><span class="p">)</span>
<span class="n">resultY</span> <span class="o">=</span> <span class="n">detrend</span><span class="p">(</span><span class="n">resultY</span><span class="p">,</span> <span class="n">detrend_func</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
<span class="n">resultY</span> <span class="o">=</span> <span class="n">resultY</span> <span class="o">*</span> <span class="n">window</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
<span class="n">resultY</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">fft</span><span class="p">(</span><span class="n">resultY</span><span class="p">,</span> <span class="n">n</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)[:</span><span class="n">numFreqs</span><span class="p">,</span> <span class="p">:]</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">conj</span><span class="p">(</span><span class="n">result</span><span class="p">)</span> <span class="o">*</span> <span class="n">resultY</span>
<span class="k">elif</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'psd'</span><span class="p">:</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">conj</span><span class="p">(</span><span class="n">result</span><span class="p">)</span> <span class="o">*</span> <span class="n">result</span>
<span class="k">elif</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'magnitude'</span><span class="p">:</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">result</span><span class="p">)</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">window</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span>
<span class="k">elif</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'angle'</span> <span class="ow">or</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'phase'</span><span class="p">:</span>
<span class="c1"># we unwrap the phase later to handle the onesided vs. twosided case</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">angle</span><span class="p">(</span><span class="n">result</span><span class="p">)</span>
<span class="k">elif</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'complex'</span><span class="p">:</span>
<span class="n">result</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">window</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span>
<span class="k">if</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'psd'</span><span class="p">:</span>
<span class="c1"># Also include scaling factors for one-sided densities and dividing by</span>
<span class="c1"># the sampling frequency, if desired. Scale everything, except the DC</span>
<span class="c1"># component and the NFFT/2 component:</span>
<span class="c1"># if we have a even number of frequencies, don't scale NFFT/2</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">NFFT</span> <span class="o">%</span> <span class="mi">2</span><span class="p">:</span>
<span class="n">slc</span> <span class="o">=</span> <span class="nb">slice</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
<span class="c1"># if we have an odd number, just don't scale DC</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">slc</span> <span class="o">=</span> <span class="nb">slice</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
<span class="n">result</span><span class="p">[</span><span class="n">slc</span><span class="p">]</span> <span class="o">*=</span> <span class="n">scaling_factor</span>
<span class="c1"># MATLAB divides by the sampling frequency so that density function</span>
<span class="c1"># has units of dB/Hz and can be integrated by the plotted frequency</span>
<span class="c1"># values. Perform the same scaling here.</span>
<span class="k">if</span> <span class="n">scale_by_freq</span><span class="p">:</span>
<span class="n">result</span> <span class="o">/=</span> <span class="n">Fs</span>
<span class="c1"># Scale the spectrum by the norm of the window to compensate for</span>
<span class="c1"># windowing loss; see Bendat & Piersol Sec 11.5.2.</span>
<span class="n">result</span> <span class="o">/=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">window</span><span class="p">)</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span>
<span class="k">else</span><span class="p">:</span>
<span class="c1"># In this case, preserve power in the segment, not amplitude</span>
<span class="n">result</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">window</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span><span class="o">**</span><span class="mi">2</span>
<span class="n">t</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">NFFT</span><span class="o">/</span><span class="mi">2</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="o">-</span> <span class="n">NFFT</span><span class="o">/</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">NFFT</span> <span class="o">-</span> <span class="n">noverlap</span><span class="p">)</span><span class="o">/</span><span class="n">Fs</span>
<span class="k">if</span> <span class="n">sides</span> <span class="o">==</span> <span class="s1">'twosided'</span><span class="p">:</span>
<span class="c1"># center the frequency range at zero</span>
<span class="n">freqs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">freqs</span><span class="p">[</span><span class="n">freqcenter</span><span class="p">:],</span> <span class="n">freqs</span><span class="p">[:</span><span class="n">freqcenter</span><span class="p">]))</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">result</span><span class="p">[</span><span class="n">freqcenter</span><span class="p">:,</span> <span class="p">:],</span>
<span class="n">result</span><span class="p">[:</span><span class="n">freqcenter</span><span class="p">,</span> <span class="p">:]),</span> <span class="mi">0</span><span class="p">)</span>
<span class="k">elif</span> <span class="ow">not</span> <span class="n">pad_to</span> <span class="o">%</span> <span class="mi">2</span><span class="p">:</span>
<span class="c1"># get the last value correctly, it is negative otherwise</span>
<span class="n">freqs</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*=</span> <span class="o">-</span><span class="mi">1</span>
<span class="c1"># we unwrap the phase here to handle the onesided vs. twosided case</span>
<span class="k">if</span> <span class="n">mode</span> <span class="o">==</span> <span class="s1">'phase'</span><span class="p">:</span>
<span class="n">result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unwrap</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
<span class="k">return</span> <span class="n">result</span><span class="p">,</span> <span class="n">freqs</span><span class="p">,</span> <span class="n">t</span>
<span class="k">def</span> <span class="nf">_single_spectrum_helper</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">mode</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">'''</span>
<span class="sd"> This is a helper function that implements the commonality between the</span>
<span class="sd"> complex, magnitude, angle, and phase spectrums.</span>
<span class="sd"> It is *NOT* meant to be used outside of mlab and may change at any time.</span>
<span class="sd"> '''</span>
<span class="n">cbook</span><span class="o">.</span><span class="n">_check_in_list</span><span class="p">([</span><span class="s1">'complex'</span><span class="p">,</span> <span class="s1">'magnitude'</span><span class="p">,</span> <span class="s1">'angle'</span><span class="p">,</span> <span class="s1">'phase'</span><span class="p">],</span> <span class="n">mode</span><span class="o">=</span><span class="n">mode</span><span class="p">)</span>
<span class="k">if</span> <span class="n">pad_to</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">pad_to</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="n">spec</span><span class="p">,</span> <span class="n">freqs</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">_spectral_helper</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">Fs</span><span class="o">=</span><span class="n">Fs</span><span class="p">,</span>
<span class="n">detrend_func</span><span class="o">=</span><span class="n">detrend_none</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="n">window</span><span class="p">,</span>
<span class="n">noverlap</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">,</span>
<span class="n">scale_by_freq</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="n">mode</span><span class="o">=</span><span class="n">mode</span><span class="p">)</span>
<span class="k">if</span> <span class="n">mode</span> <span class="o">!=</span> <span class="s1">'complex'</span><span class="p">:</span>
<span class="n">spec</span> <span class="o">=</span> <span class="n">spec</span><span class="o">.</span><span class="n">real</span>
<span class="k">if</span> <span class="n">spec</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">spec</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
<span class="n">spec</span> <span class="o">=</span> <span class="n">spec</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span>
<span class="k">return</span> <span class="n">spec</span><span class="p">,</span> <span class="n">freqs</span>
<span class="c1"># Split out these keyword docs so that they can be used elsewhere</span>
<span class="n">docstring</span><span class="o">.</span><span class="n">interpd</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">Spectral</span><span class="o">=</span><span class="n">inspect</span><span class="o">.</span><span class="n">cleandoc</span><span class="p">(</span><span class="s2">"""</span>
<span class="s2"> Fs : scalar</span>
<span class="s2"> The sampling frequency (samples per time unit). It is used</span>
<span class="s2"> to calculate the Fourier frequencies, freqs, in cycles per time</span>
<span class="s2"> unit. The default value is 2.</span>
<span class="s2"> window : callable or ndarray</span>
<span class="s2"> A function or a vector of length *NFFT*. To create window vectors see</span>
<span class="s2"> `window_hanning`, `window_none`, `numpy.blackman`, `numpy.hamming`,</span>
<span class="s2"> `numpy.bartlett`, `scipy.signal`, `scipy.signal.get_window`, etc. The</span>
<span class="s2"> default is `window_hanning`. If a function is passed as the argument,</span>
<span class="s2"> it must take a data segment as an argument and return the windowed</span>
<span class="s2"> version of the segment.</span>
<span class="s2"> sides : {'default', 'onesided', 'twosided'}</span>
<span class="s2"> Specifies which sides of the spectrum to return. Default gives the</span>
<span class="s2"> default behavior, which returns one-sided for real data and both</span>
<span class="s2"> for complex data. 'onesided' forces the return of a one-sided</span>
<span class="s2"> spectrum, while 'twosided' forces two-sided.</span>
<span class="s2">"""</span><span class="p">))</span>
<span class="n">docstring</span><span class="o">.</span><span class="n">interpd</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">Single_Spectrum</span><span class="o">=</span><span class="n">inspect</span><span class="o">.</span><span class="n">cleandoc</span><span class="p">(</span><span class="s2">"""</span>
<span class="s2"> pad_to : int</span>
<span class="s2"> The number of points to which the data segment is padded when</span>
<span class="s2"> performing the FFT. While not increasing the actual resolution of</span>
<span class="s2"> the spectrum (the minimum distance between resolvable peaks),</span>
<span class="s2"> this can give more points in the plot, allowing for more</span>
<span class="s2"> detail. This corresponds to the *n* parameter in the call to fft().</span>
<span class="s2"> The default is None, which sets *pad_to* equal to the length of the</span>
<span class="s2"> input signal (i.e. no padding).</span>
<span class="s2">"""</span><span class="p">))</span>
<span class="n">docstring</span><span class="o">.</span><span class="n">interpd</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">PSD</span><span class="o">=</span><span class="n">inspect</span><span class="o">.</span><span class="n">cleandoc</span><span class="p">(</span><span class="s2">"""</span>
<span class="s2"> pad_to : int</span>
<span class="s2"> The number of points to which the data segment is padded when</span>
<span class="s2"> performing the FFT. This can be different from *NFFT*, which</span>
<span class="s2"> specifies the number of data points used. While not increasing</span>
<span class="s2"> the actual resolution of the spectrum (the minimum distance between</span>
<span class="s2"> resolvable peaks), this can give more points in the plot,</span>
<span class="s2"> allowing for more detail. This corresponds to the *n* parameter</span>
<span class="s2"> in the call to fft(). The default is None, which sets *pad_to*</span>
<span class="s2"> equal to *NFFT*</span>
<span class="s2"> NFFT : int</span>
<span class="s2"> The number of data points used in each block for the FFT.</span>
<span class="s2"> A power 2 is most efficient. The default value is 256.</span>
<span class="s2"> This should *NOT* be used to get zero padding, or the scaling of the</span>
<span class="s2"> result will be incorrect. Use *pad_to* for this instead.</span>
<span class="s2"> detrend : {'none', 'mean', 'linear'} or callable, default 'none'</span>
<span class="s2"> The function applied to each segment before fft-ing, designed to</span>
<span class="s2"> remove the mean or linear trend. Unlike in MATLAB, where the</span>
<span class="s2"> *detrend* parameter is a vector, in Matplotlib is it a function.</span>
<span class="s2"> The :mod:`~matplotlib.mlab` module defines `.detrend_none`,</span>
<span class="s2"> `.detrend_mean`, and `.detrend_linear`, but you can use a custom</span>
<span class="s2"> function as well. You can also use a string to choose one of the</span>
<span class="s2"> functions: 'none' calls `.detrend_none`. 'mean' calls `.detrend_mean`.</span>
<span class="s2"> 'linear' calls `.detrend_linear`.</span>
<span class="s2"> scale_by_freq : bool, optional</span>
<span class="s2"> Specifies whether the resulting density values should be scaled</span>
<span class="s2"> by the scaling frequency, which gives density in units of Hz^-1.</span>
<span class="s2"> This allows for integration over the returned frequency values.</span>
<span class="s2"> The default is True for MATLAB compatibility.</span>
<span class="s2">"""</span><span class="p">))</span>
<div class="viewcode-block" id="psd"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.psd">[docs]</a><span class="nd">@docstring</span><span class="o">.</span><span class="n">dedent_interpd</span>
<span class="k">def</span> <span class="nf">psd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">detrend</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">noverlap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">scale_by_freq</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sa">r</span><span class="sd">"""</span>
<span class="sd"> Compute the power spectral density.</span>
<span class="sd"> The power spectral density :math:`P_{xx}` by Welch's average</span>
<span class="sd"> periodogram method. The vector *x* is divided into *NFFT* length</span>
<span class="sd"> segments. Each segment is detrended by function *detrend* and</span>
<span class="sd"> windowed by function *window*. *noverlap* gives the length of</span>
<span class="sd"> the overlap between segments. The :math:`|\mathrm{fft}(i)|^2`</span>
<span class="sd"> of each segment :math:`i` are averaged to compute :math:`P_{xx}`.</span>
<span class="sd"> If len(*x*) < *NFFT*, it will be zero padded to *NFFT*.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1-D array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> %(Spectral)s</span>
<span class="sd"> %(PSD)s</span>
<span class="sd"> noverlap : integer</span>
<span class="sd"> The number of points of overlap between segments.</span>
<span class="sd"> The default value is 0 (no overlap).</span>
<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> Pxx : 1-D array</span>
<span class="sd"> The values for the power spectrum `P_{xx}` (real valued)</span>
<span class="sd"> freqs : 1-D array</span>
<span class="sd"> The frequencies corresponding to the elements in *Pxx*</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> Bendat & Piersol -- Random Data: Analysis and Measurement Procedures, John</span>
<span class="sd"> Wiley & Sons (1986)</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> specgram</span>
<span class="sd"> `specgram` differs in the default overlap; in not returning the mean of</span>
<span class="sd"> the segment periodograms; and in returning the times of the segments.</span>
<span class="sd"> magnitude_spectrum : returns the magnitude spectrum.</span>
<span class="sd"> csd : returns the spectral density between two signals.</span>
<span class="sd"> """</span>
<span class="n">Pxx</span><span class="p">,</span> <span class="n">freqs</span> <span class="o">=</span> <span class="n">csd</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="n">NFFT</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="n">Fs</span><span class="p">,</span> <span class="n">detrend</span><span class="o">=</span><span class="n">detrend</span><span class="p">,</span>
<span class="n">window</span><span class="o">=</span><span class="n">window</span><span class="p">,</span> <span class="n">noverlap</span><span class="o">=</span><span class="n">noverlap</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">,</span> <span class="n">scale_by_freq</span><span class="o">=</span><span class="n">scale_by_freq</span><span class="p">)</span>
<span class="k">return</span> <span class="n">Pxx</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">freqs</span></div>
<div class="viewcode-block" id="csd"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.csd">[docs]</a><span class="nd">@docstring</span><span class="o">.</span><span class="n">dedent_interpd</span>
<span class="k">def</span> <span class="nf">csd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">detrend</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">noverlap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">scale_by_freq</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Compute the cross-spectral density.</span>
<span class="sd"> The cross spectral density :math:`P_{xy}` by Welch's average</span>
<span class="sd"> periodogram method. The vectors *x* and *y* are divided into</span>
<span class="sd"> *NFFT* length segments. Each segment is detrended by function</span>
<span class="sd"> *detrend* and windowed by function *window*. *noverlap* gives</span>
<span class="sd"> the length of the overlap between segments. The product of</span>
<span class="sd"> the direct FFTs of *x* and *y* are averaged over each segment</span>
<span class="sd"> to compute :math:`P_{xy}`, with a scaling to correct for power</span>
<span class="sd"> loss due to windowing.</span>
<span class="sd"> If len(*x*) < *NFFT* or len(*y*) < *NFFT*, they will be zero</span>
<span class="sd"> padded to *NFFT*.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x, y : 1-D arrays or sequences</span>
<span class="sd"> Arrays or sequences containing the data</span>
<span class="sd"> %(Spectral)s</span>
<span class="sd"> %(PSD)s</span>
<span class="sd"> noverlap : integer</span>
<span class="sd"> The number of points of overlap between segments.</span>
<span class="sd"> The default value is 0 (no overlap).</span>
<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> Pxy : 1-D array</span>
<span class="sd"> The values for the cross spectrum `P_{xy}` before scaling (real valued)</span>
<span class="sd"> freqs : 1-D array</span>
<span class="sd"> The frequencies corresponding to the elements in *Pxy*</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> Bendat & Piersol -- Random Data: Analysis and Measurement Procedures, John</span>
<span class="sd"> Wiley & Sons (1986)</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> psd : equivalent to setting ``y = x``.</span>
<span class="sd"> """</span>
<span class="k">if</span> <span class="n">NFFT</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">NFFT</span> <span class="o">=</span> <span class="mi">256</span>
<span class="n">Pxy</span><span class="p">,</span> <span class="n">freqs</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">_spectral_helper</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="o">=</span><span class="n">y</span><span class="p">,</span> <span class="n">NFFT</span><span class="o">=</span><span class="n">NFFT</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="n">Fs</span><span class="p">,</span>
<span class="n">detrend_func</span><span class="o">=</span><span class="n">detrend</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="n">window</span><span class="p">,</span>
<span class="n">noverlap</span><span class="o">=</span><span class="n">noverlap</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">,</span> <span class="n">scale_by_freq</span><span class="o">=</span><span class="n">scale_by_freq</span><span class="p">,</span>
<span class="n">mode</span><span class="o">=</span><span class="s1">'psd'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">Pxy</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
<span class="k">if</span> <span class="n">Pxy</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">></span> <span class="mi">1</span><span class="p">:</span>
<span class="n">Pxy</span> <span class="o">=</span> <span class="n">Pxy</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">Pxy</span> <span class="o">=</span> <span class="n">Pxy</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">]</span>
<span class="k">return</span> <span class="n">Pxy</span><span class="p">,</span> <span class="n">freqs</span></div>
<div class="viewcode-block" id="complex_spectrum"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.complex_spectrum">[docs]</a><span class="nd">@docstring</span><span class="o">.</span><span class="n">dedent_interpd</span>
<span class="k">def</span> <span class="nf">complex_spectrum</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Compute the complex-valued frequency spectrum of *x*. Data is padded to a</span>
<span class="sd"> length of *pad_to* and the windowing function *window* is applied to the</span>
<span class="sd"> signal.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1-D array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> %(Spectral)s</span>
<span class="sd"> %(Single_Spectrum)s</span>
<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> spectrum : 1-D array</span>
<span class="sd"> The values for the complex spectrum (complex valued)</span>
<span class="sd"> freqs : 1-D array</span>
<span class="sd"> The frequencies corresponding to the elements in *spectrum*</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> magnitude_spectrum</span>
<span class="sd"> Returns the absolute value of this function.</span>
<span class="sd"> angle_spectrum</span>
<span class="sd"> Returns the angle of this function.</span>
<span class="sd"> phase_spectrum</span>
<span class="sd"> Returns the phase (unwrapped angle) of this function.</span>
<span class="sd"> specgram</span>
<span class="sd"> Can return the complex spectrum of segments within the signal.</span>
<span class="sd"> """</span>
<span class="k">return</span> <span class="n">_single_spectrum_helper</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="n">Fs</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="n">window</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">'complex'</span><span class="p">)</span></div>
<div class="viewcode-block" id="magnitude_spectrum"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.magnitude_spectrum">[docs]</a><span class="nd">@docstring</span><span class="o">.</span><span class="n">dedent_interpd</span>
<span class="k">def</span> <span class="nf">magnitude_spectrum</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Compute the magnitude (absolute value) of the frequency spectrum of</span>
<span class="sd"> *x*. Data is padded to a length of *pad_to* and the windowing function</span>
<span class="sd"> *window* is applied to the signal.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> x : 1-D array or sequence</span>
<span class="sd"> Array or sequence containing the data</span>
<span class="sd"> %(Spectral)s</span>
<span class="sd"> %(Single_Spectrum)s</span>
<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> spectrum : 1-D array</span>
<span class="sd"> The values for the magnitude spectrum (real valued)</span>
<span class="sd"> freqs : 1-D array</span>
<span class="sd"> The frequencies corresponding to the elements in *spectrum*</span>
<span class="sd"> See Also</span>
<span class="sd"> --------</span>
<span class="sd"> psd</span>
<span class="sd"> Returns the power spectral density.</span>
<span class="sd"> complex_spectrum</span>
<span class="sd"> This function returns the absolute value of `complex_spectrum`.</span>
<span class="sd"> angle_spectrum</span>
<span class="sd"> Returns the angles of the corresponding frequencies.</span>
<span class="sd"> phase_spectrum</span>
<span class="sd"> Returns the phase (unwrapped angle) of the corresponding frequencies.</span>
<span class="sd"> specgram</span>
<span class="sd"> Can return the complex spectrum of segments within the signal.</span>
<span class="sd"> """</span>
<span class="k">return</span> <span class="n">_single_spectrum_helper</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="n">Fs</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="n">window</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="n">pad_to</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="n">sides</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">'magnitude'</span><span class="p">)</span></div>
<div class="viewcode-block" id="angle_spectrum"><a class="viewcode-back" href="../../api/mlab_api.html#matplotlib.mlab.angle_spectrum">[docs]</a><span class="nd">@docstring</span><span class="o">.</span><span class="n">dedent_interpd</span>
<span class="k">def</span> <span class="nf">angle_spectrum</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Fs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">window</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pad_to</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">sides</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Compute the angle of the frequency spectrum (wrapped phase spectrum) of</span>
<span class="sd"> *x*. Data is padded to a length of *pad_to* and the windowing function</span>
<span class="sd"> *window* is applied to the signal.</span>