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Commits on May 22, 2012

• [maven-release-plugin] prepare release biojava-3.0.4

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Commits on Mar 16, 2012

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0.3

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Commits on Mar 15, 2012

• previous commit, "deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)" missed removing unit tests

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• deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)

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Commits on Mar 12, 2012

• undid more unnecessary reformatting that made the code harder to read in the Fastq test cases, also removed some unnecessary import statements

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• undid some unnecessary reformatting that made the code harder to read in FastqBuilderTest.java

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• moved fastq classes from biojava3.sequencing.io.fastq to biojava3.genome.parsers.fastq

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Commits on Jan 16, 2012

• Simplified boolean expressions.

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Commits on Dec 15, 2011

• replacing < and > with &lt; and &gt; in order not to break HTML and enable generating .CHM files using http://jan.baresovi.cz/dr/en/javadoc-chm

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Commits on Sep 2, 2011

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0.2

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Commits on Aug 31, 2011

• cleaning pom files, removing warnings.

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Commits on Aug 30, 2011

• Ignore unit test output

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Commits on Feb 14, 2011

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0.1

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Commits on Jan 24, 2011

• Added FeatureHelper which allows you to build indexes based on a feature attribute value. This is then used in GeneFeatureHelper when parsing a gmod gff3 file to quickly find the features that belo…

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Commits on Jan 21, 2011

• Added FeatureHelper which allows you to build indexes based on a feature attribute value. This is then used in GeneFeatureHelper when parsing a gmod gff3 file to quickly find the features that belo…

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Commits on Jan 1, 2011

• Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0

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• Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0

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Commits on Dec 28, 2010

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0

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Commits on Dec 23, 2010

• Changed test case reference where stop codons are being returned as * now

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Commits on Dec 22, 2010

• updating version nr. of depedencies.

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Commits on Dec 20, 2010

• Minor updates

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Commits on Dec 19, 2010

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0-beta4

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• now deleting a file that gets generated during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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• now deleting a file that gets generated during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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• now deleting a file that get generate during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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Commits on Dec 17, 2010

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0-beta3

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Commits on Nov 24, 2010

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0-beta1

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• [maven-release-plugin] rollback the release of biojava-3.0-beta1

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