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Commits on Mar 11, 2020

• Merge pull request #5 from r614/master

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  jnorthrup

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  77b7480

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• Merge branch 'interface-finder' of https://github.com/josemduarte/biojava into josemduarte-interface-finder

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  Jim Northrup

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Commits on Mar 8, 2020

• central URL cache using OKHttp3, partially working

  

  me

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  5607faa

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• updates

  

  me

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• updates

  

  me

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• updates

  

  me

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• updates

  

  me

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Commits on Mar 7, 2020

• updates

  

  me

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• updates

  

  me

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• cleanup continued; core and structure unit tests still pass, other modules untested

  

  me

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• automated IDE cleanups and some possible bug fixes

  

  me

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• dependency upgrades (untested)

  

  me

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Commits on Jan 25, 2020

• Merge branch 'master' into interface-finder

  josemduarte

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• Cleanup

  josemduarte

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• Merge pull request #859 from josemduarte/optimise-sym-mates-clusterer

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  josemduarte

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• Fixes

  josemduarte

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• Docs

  josemduarte

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• With bounding box optimization

  josemduarte

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• Initial implementation and tests

  josemduarte

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Commits on Jan 22, 2020

• Docs, a new StructureTools method and a new performance test (ignored)

  josemduarte

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• Small optimization

  josemduarte

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• More checks and a warning in case no aligned atoms found. Also a few minor fixes

  josemduarte

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• Some improvements

  josemduarte

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Commits on Jan 21, 2020

• Fixing the cluster by entity id alignment issue. Now tests pass

  josemduarte

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• Now testing for subunit clustering with entity ids

  josemduarte

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• Right order of params

  josemduarte

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• New test

  josemduarte

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Commits on Jan 20, 2020

• Extracting method in test

  josemduarte

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Commits on Jan 12, 2020

• Merge pull request #857 from josemduarte/optimise-sym-mates-clusterer

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  josemduarte

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• Increasing the default num cells to explore in crystal reconstruction

  josemduarte

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Commits on Jan 7, 2020

• Using mergeIdentical breaks a test, reverting

  josemduarte

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• Reverted change that caused TestQsAlignExamples to fail

  josemduarte

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Commits on Jan 5, 2020

• Introduced optimization: now if switch is provided subunit clustering uses entity id infor.

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  josemduarte

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Commits on Dec 27, 2019

• Extracting duplicate code to a method. Some cleanups

  josemduarte

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Commits on Dec 12, 2019

• Logging, cleanups, cosmetics

  josemduarte

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