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Commits on Jul 25, 2016

• Implement test for QsAlign algorithm

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Commits on Jul 21, 2016

• Complete the QsAlign algorithm

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Commits on Jul 1, 2016

• now printing author chain ID

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Commits on Jun 17, 2016

• adding biojava's internal sec struc assignment to example

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Commits on Jun 7, 2016

• Refactored getChain(int chainIndex) and getChain(int modelNr, int chainIndex) to getChainByIndex().

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Commits on May 19, 2016

• Now getting mmSize from num operators and chains.

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• Fixed a bug in reconstructing the bioassembly from pdb format.

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Commits on May 12, 2016

• Reverting getPolyChainsByPDB, keeping getNonPolyChainsByPDB

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Commits on May 11, 2016

• changing get*ChainByPDB methods signature to return List<Chain>

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Commits on May 10, 2016

• Important bug fixes and docs in Structure/StructureImpl.

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Commits on Apr 20, 2016

• Some refactoring and docs

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Commits on Apr 19, 2016

• Additional testing of the reader and writer.

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• Refactored function names in MMTFActions

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Commits on Apr 12, 2016

• Updates to Biojava to remove any mention of the Messagepack serializer /deserializer

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Commits on Apr 11, 2016

• Updates and documentation to the MmtfActions class.

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Commits on Apr 9, 2016

• Updates to the reader and writer due to downstream changes in the mmtf

  abradle

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• Updated to initialise all the arrays during the writing process

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Commits on Apr 8, 2016

• Updates to the Demos so they are mains.

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• Added three new demos (reader, writer and roundtrip) to Biojava.

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Commits on Mar 31, 2016

• Refactoring of Compound to EntityInfo

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Commits on Mar 23, 2016

• Refactoring of getters and setters.

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Commits on Mar 14, 2016

• Updates to the Biojava code to include imporved handling of Entity information.

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Commits on Mar 10, 2016

• Light cleanup:

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• Running spacestotabs on recent changes

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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• More whitespace fixes

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• Converting initial spaces to tabs.

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• Remove trailing whitespace globally from .java files

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Commits on Mar 8, 2016

• Removing loadChemCompInfo, some tests don't pass yet

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Commits on Feb 1, 2016

• Merge branch 'master' into cesymm

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Commits on Jan 26, 2016

• Merge branch 'master' into cesymm

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  lafita

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• #383 updating of demo scripts to new StructureIdentifier convention

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Commits on Jan 25, 2016

• Make CeSymm static class

  lafita

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• Update demo because of StructureIdentifier

  lafita

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Commits on Jan 8, 2016

• #360 improving class and method names

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