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lines changed Original file line number Diff line number Diff line change @@ -20,7 +20,7 @@ is the same as
2020```
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23- ## Where are the files getting written to?
23+ ## Where Are the Files Written to?
2424
2525By default the AtomCache writes all files into a temporary location (The system temp directory "java.io.tempdir").
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@@ -45,7 +45,7 @@ The AtomCache also provides access to configuring various options that are avail
4545parsing of files. The [ FileParsingParameters] ( http://www.biojava.org/docs/api/org/biojava/nbio/structure/io/FileParsingParameters.html )
4646class is the main place to influence the level of detail and as a consequence the speed with which files can be loaded.
4747
48- This example turns on the use of chemical components when loading a structure . (See also the [ next chapter] ( chemcomp.md ) )
48+ This example turns on the use of chemical components when loading a ` Structure ` . (See also the [ next chapter] ( chemcomp.md ) )
4949
5050``` java
5151 AtomCache cache = new AtomCache ();
@@ -89,9 +89,9 @@ There are quite a number of external database IDs that are supported here. See t
8989
9090Navigation:
9191[ Home] ( ../README.md )
92- | [ Book 3: The Protein Structure modules] ( README.md )
92+ | [ Book 3: The Structure modules] ( README.md )
9393| Chapter 4 : Local installations
9494
95- Prev: [ Chapter 3 : data model ] ( structure-data-model.md )
95+ Prev: [ Chapter 3 : Structure Data Model ] ( structure-data-model.md )
9696
9797Next: [ Chapter 5 : Chemical Component Dictionary] ( chemcomp.md )
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