cff-version: 1.0.3
message: If you use BioJava, please cite the software and the most recent paper reference (Lafita 2019).
title: BioJava
version: 5.2.1
date-released: 2019-02-05
doi: 10.5281/zenodo.2557853
commit: 783065396f92f14c3fb6e2b9a684a17aa46bb974
url: http://www.biojava.org
repository-code: https://github.com/biojava/biojava/
license: LGPL-2.1-only
abstract: >-
BioJava is an open-source project dedicated to providing a Java framework for processing biological
data. It provides analytical and statistical routines, parsers for common file formats and allows the
manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application
development for bioinformatics.
authors:
- family-names: Prlić
given-names: Andreas
- family-names: Lafita
given-names: Aleix
- family-names: ALHOSSARY
given-names: Amr
- family-names: Dräger
given-names: Andreas
- family-names: Yates
given-names: Andy
- family-names: Bradley
given-names: Anthony
- family-names: Foti
given-names: Carmelo
- family-names: Koh
given-names: Chuan Hock
- family-names: Myers-Turnbull
given-names: Douglas
- family-names: Rimsa
given-names: Gediminas
- family-names: Waldon
given-names: George
- family-names: Brandstätter-Müller
given-names: Hannes
- name: Elinow
- family-names: Gao
given-names: Jianjiong
- family-names: Warren
given-names: Jonathan
- family-names: Duarte
given-names: Jose Manuel
- family-names: Jacobsen
given-names: Jules
- family-names: Nicholas
given-names: Karl
- family-names: Chapman
given-names: Mark
- family-names: Heuer
given-names: Michael
- family-names: Rose
given-names: Peter
- family-names: Troshin
given-names: Peter
- family-names: Holland
given-names: Richard
- family-names: Thornton
given-names: Robert
- family-names: Willis
given-names: Scooter
- family-names: Bliven
given-names: Spencer
- family-names: Foisy
given-names: Sylvain
references:
- type: article
authors:
- family-names: Lafita
given-names: Aleix
orcid: http://orcid.org/0000-0003-1549-3162
- family-names: Bliven
given-names: Spencer E
orcid: http://orcid.org/0000-0002-1200-1698
- family-names: Prlić
given-names: Andreas
orcid: https://orcid.org/0000-0001-6346-6391
- family-names: Guzenko
given-names: Dmytro
orcid: https://orcid.org/0000-0002-8688-7460
- family-names: Rose
given-names: Peter W
orcid: http://orcid.org/0000-0001-9981-9750
- family-names: Bradley
given-names: Anthony
orcid: http://orcid.org/0000-0002-0881-3490
- family-names: Pavan
given-names: Paolo
- family-names: Myers-Turnbull
given-names: Douglas
orcid: http://orcid.org/0000-0003-3610-4808
- family-names: Valasatava
given-names: Yana
orcid: http://orcid.org/0000-0003-1018-5718
- family-names: Heuer
given-names: Michael
orcid: http://orcid.org/0000-0002-9052-6000
- family-names: Larson
given-names: Matt
orcid: http://orcid.org/0000-0003-2116-5747
- family-names: Burley
given-names: Stephen K
- family-names: Duarte
given-names: Jose M
orcid: http://orcid.org/0000-0002-9544-5621
title: "BioJava 5: A community driven open-source bioinformatics library"
year: 2019
journal: PLOS Computational Biology
volume: 15
number: "2"
section: e1006791
doi: 10.1371/journal.pcbi.1006791
url: http://dx.plos.org/10.1371/journal.pcbi.1006791
- type: article
authors:
- family-names: Prlić
given-names: Andreas
- family-names: Yates
given-names: Andrew
- family-names: Bliven
given-names: Spencer E
- family-names: Rose
given-names: Peter W
- family-names: Jacobsen
given-names: Julius
- family-names: Troshin
given-names: Peter V
- family-names: Chapman
given-names: Mark
- family-names: Gao
given-names: Jianjiong
- family-names: Koh
given-names: Chuan Hock
- family-names: Foisy
given-names: Sylvain
- family-names: Holland
given-names: Richard
- family-names: Rimša
given-names: Gediminas
- family-names: Heuer
given-names: Michael L
- family-names: Brandstätter-Müller
given-names: H
- family-names: Bourne
given-names: Philip E
- family-names: Willis
given-names: Scooter
title: "BioJava: an open-source framework for bioinformatics in 2012"
journal: Bioinformatics
year: 2012
volume: 28
number: "20"
section: 2693-2695
doi: 10.1093/bioinformatics/bts494
- type: article
authors:
- family-names: Holland
given-names: R C G
- family-names: Down
given-names: T A
- family-names: Pocock
given-names: M
- family-names: Prlić
given-names: A
- family-names: Huen
given-names: D
- family-names: James
given-names: K
- family-names: Foisy
given-names: S
- family-names: Dräger
given-names: A
- family-names: Yates
given-names: A
- family-names: Heuer
given-names: M
- family-names: Schreiber
given-names: M J
title: "BioJava: an open-source framework for bioinformatics"
journal: Bioinformatics
year: 2008
volume: 24
number: "18"
section: 2096-2097
doi: 10.1093/bioinformatics/btn397