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Removed v4 deprecations#749

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josemduarte merged 2 commits intobiojava:masterfrom
josemduarte:removeV4deprecations
Mar 14, 2018
Merged

Removed v4 deprecations#749
josemduarte merged 2 commits intobiojava:masterfrom
josemduarte:removeV4deprecations

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@josemduarte
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A further cleanup for the 5 release. Removed anything that was deprecated in v3->v4 or before, checked by comparing to 4 branch. Kept everything that was deprecated in v4->v5.

@lafita lafita added this to the BioJava 5.0.0 milestone Mar 12, 2018
@lafita lafita added the organization Maven and project structure label Mar 12, 2018
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This one is hard to review, but if tests pass we can merge.

@josemduarte
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Thanks @lafita , I've tested it locally and it worked. I'll merge it in later today to leave more time for comments.

@josemduarte josemduarte merged commit 763f7ec into biojava:master Mar 14, 2018
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