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onbiojava-4.2.11

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Commits on Dec 12, 2017

• Revert to old behavior where process(int) return null on end-of-file.

  

  arojnuckarin

  authored and

  josemduarte

  committed
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• Attempt to fix issue #659 - Error parsing FASTA in multiple passes

  

  arojnuckarin

  authored and

  josemduarte

  committed
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Commits on Jul 5, 2017

• Adding missing methods to the interface

  valasatava

  committed
  450b43c

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• Cherry-pick the c5fa135 commit

  valasatava

  committed
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Commits on Nov 9, 2016

• Fix #596. Remove test for GenBank identifier parsing

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  sbliven

  committed
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Commits on Jul 1, 2016

• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
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• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
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Commits on Mar 10, 2016

• Running spacestotabs on recent changes

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  sbliven

  committed
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Commits on Mar 9, 2016

• Removing unnecessary casts

  sbliven

  committed
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• More whitespace fixes

  sbliven

  committed
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• Removing unused imports

  sbliven

  committed
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• Automatically adding missing @Override

  sbliven

  committed
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• Converting initial spaces to tabs.

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  sbliven

  committed
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• Removing template messages

  sbliven

  committed
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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
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• Running addlicense.sh

  sbliven

  committed
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Commits on Mar 7, 2016

• Make classes serializable for Spark

  abradle

  committed
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• Make classes serializable for Spark

  abradle

  committed
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• Make classes serializable for Spark

  abradle

  committed
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• Make classes serializable for Spark

  abradle

  committed
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• Make classes serializable for Spark

  abradle

  committed
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• Updates to make serializable for Spark

  abradle

  committed
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Commits on Mar 4, 2016

• Minor doc addition

  sbliven

  committed
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Commits on Feb 24, 2016

• Merge remote-tracking branch 'upstream/master'

  josemduarte

  committed
  3f1f498

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• Fixing issues arising after making DownloadChemCompProvider the default

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  josemduarte

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Commits on Feb 19, 2016

• Add method to allow pulling protein aliases from UniProt records

  emckee2006

  committed
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Commits on Feb 3, 2016

• FastaWriter was throwing Exception instead of IOException

  lafita

  committed
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Commits on Jan 29, 2016

• Adding serializable interface to a few classes

  josemduarte

  committed
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Commits on Jan 28, 2016

• A bunch of small fixes, mostly docs and logs

  josemduarte

  committed
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Commits on Jan 25, 2016

• Merge pull request #363 from emckee2006/master

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  andreasprlic

  committed
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Commits on Jan 19, 2016

• Adding URLIdentifier for files and URLs

  sbliven

  committed
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Commits on Jan 11, 2016

• Merge branch 'pr/38'

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  emckee2006

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• Change AbstractFeature Qualifiers to a key:Array from key:value #302

  emckee2006

  committed
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Commits on Dec 5, 2015

• fix #344

  andreasprlic

  committed
  cf1c735

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• adding a couple of demo files to the core project

  andreasprlic

  committed
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