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josemduarte · josemduarte · commit 4e0473ec527a · 2021-09-03T09:00:02.000-07:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/BondMaker.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/BondMaker.java
@@ -167,7 +167,7 @@ private void formIntraResidueBonds() {
 						continue;
 					}
 					// Now add support for altLocGroup
-					List<Group> totList = new ArrayList<Group>();
+					List<Group> totList = new ArrayList<>();
 					totList.add(mainGroup);
 					totList.addAll(mainGroup.getAltLocs());
 
@@ -333,7 +333,7 @@ public void formLinkRecordBond(LinkRecord linkRecord) {
 			return;
 
 		try {
-			// The PDB format uses author chain ids to reference. But one author chain id corresponds to multiple asym ids,
+			// The PDB format uses author chain ids to reference chains. But one author chain id corresponds to multiple asym ids,
 			// thus we need to grab all the possible asym ids (poly and nonpoly) and then try to find the atoms
 			// See issue https://github.com/biojava/biojava/issues/943
 			String polyChainId1 = structure.getPolyChainByPDB(linkRecord.getChainID1()).getId();
