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josemduartejosemduarte
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Some extra rare fields in atom_sites
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  • biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/model

1 file changed

+183
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lines changed

‎biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/model/AtomSites.java‎

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@@ -10,6 +10,8 @@
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public class AtomSites extends AbstractBean {
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String entry_id;
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// to my knowledge this field is not used - JD 2016-11-22
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String Cartn_transform_axes;
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@CIFLabel(label="fract_transf_matrix[1][1]")
@@ -50,6 +52,43 @@ public class AtomSites extends AbstractBean {
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@CIFLabel(label="fract_transf_vector[3]")
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String fract_transf_vector3;
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// these fields are unusual but appear in some entries like 5e5j - JD 2016-11-22
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@CIFLabel(label="Cartn_transf_matrix[1][1]")
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String Cartn_transf_matrix11;
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@CIFLabel(label="Cartn_transf_matrix[1][2]")
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String Cartn_transf_matrix12;
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@CIFLabel(label="Cartn_transf_matrix[1][3]")
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String Cartn_transf_matrix13;
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@CIFLabel(label="Cartn_transf_matrix[2][1]")
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String Cartn_transf_matrix21;
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@CIFLabel(label="Cartn_transf_matrix[2][2]")
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String Cartn_transf_matrix22;
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@CIFLabel(label="Cartn_transf_matrix[2][3]")
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String Cartn_transf_matrix23;
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@CIFLabel(label="Cartn_transf_matrix[3][1]")
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String Cartn_transf_matrix31;
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@CIFLabel(label="Cartn_transf_matrix[3][2]")
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String Cartn_transf_matrix32;
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@CIFLabel(label="Cartn_transf_matrix[3][3]")
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String Cartn_transf_matrix33;
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@CIFLabel(label="Cartn_transf_vector[1]")
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String Cartn_transf_vector1;
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@CIFLabel(label="Cartn_transf_vector[2]")
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String Cartn_transf_vector2;
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@CIFLabel(label="Cartn_transf_vector[3]")
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String Cartn_transf_vector3;
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public String getEntry_id() {
@@ -214,5 +253,149 @@ public String getFract_transf_vector3() {
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public void setFract_transf_vector3(String fract_transf_vector3) {
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this.fract_transf_vector3 = fract_transf_vector3;
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}
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/**
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* @return the cartn_transf_matrix11
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*/
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public String getCartn_transf_matrix11() {
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return Cartn_transf_matrix11;
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}
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/**
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* @param cartn_transf_matrix11 the cartn_transf_matrix11 to set
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*/
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public void setCartn_transf_matrix11(String cartn_transf_matrix11) {
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Cartn_transf_matrix11 = cartn_transf_matrix11;
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}
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/**
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* @return the cartn_transf_matrix12
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*/
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public String getCartn_transf_matrix12() {
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return Cartn_transf_matrix12;
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}
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/**
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* @param cartn_transf_matrix12 the cartn_transf_matrix12 to set
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*/
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public void setCartn_transf_matrix12(String cartn_transf_matrix12) {
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Cartn_transf_matrix12 = cartn_transf_matrix12;
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}
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/**
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* @return the cartn_transf_matrix13
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*/
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public String getCartn_transf_matrix13() {
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return Cartn_transf_matrix13;
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}
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/**
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* @param cartn_transf_matrix13 the cartn_transf_matrix13 to set
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*/
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public void setCartn_transf_matrix13(String cartn_transf_matrix13) {
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Cartn_transf_matrix13 = cartn_transf_matrix13;
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}
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/**
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* @return the cartn_transf_matrix21
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*/
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public String getCartn_transf_matrix21() {
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return Cartn_transf_matrix21;
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}
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/**
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* @param cartn_transf_matrix21 the cartn_transf_matrix21 to set
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*/
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public void setCartn_transf_matrix21(String cartn_transf_matrix21) {
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Cartn_transf_matrix21 = cartn_transf_matrix21;
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}
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/**
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* @return the cartn_transf_matrix22
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*/
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public String getCartn_transf_matrix22() {
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return Cartn_transf_matrix22;
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}
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/**
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* @param cartn_transf_matrix22 the cartn_transf_matrix22 to set
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*/
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public void setCartn_transf_matrix22(String cartn_transf_matrix22) {
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Cartn_transf_matrix22 = cartn_transf_matrix22;
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}
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/**
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* @return the cartn_transf_matrix23
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*/
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public String getCartn_transf_matrix23() {
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return Cartn_transf_matrix23;
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}
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/**
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* @param cartn_transf_matrix23 the cartn_transf_matrix23 to set
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*/
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public void setCartn_transf_matrix23(String cartn_transf_matrix23) {
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Cartn_transf_matrix23 = cartn_transf_matrix23;
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}
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/**
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* @return the cartn_transf_matrix31
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*/
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public String getCartn_transf_matrix31() {
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return Cartn_transf_matrix31;
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}
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/**
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* @param cartn_transf_matrix31 the cartn_transf_matrix31 to set
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*/
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public void setCartn_transf_matrix31(String cartn_transf_matrix31) {
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Cartn_transf_matrix31 = cartn_transf_matrix31;
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}
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/**
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* @return the cartn_transf_matrix32
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*/
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public String getCartn_transf_matrix32() {
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return Cartn_transf_matrix32;
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}
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/**
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* @param cartn_transf_matrix32 the cartn_transf_matrix32 to set
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*/
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public void setCartn_transf_matrix32(String cartn_transf_matrix32) {
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Cartn_transf_matrix32 = cartn_transf_matrix32;
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}
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/**
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* @return the cartn_transf_matrix33
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*/
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public String getCartn_transf_matrix33() {
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return Cartn_transf_matrix33;
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}
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/**
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* @param cartn_transf_matrix33 the cartn_transf_matrix33 to set
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*/
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public void setCartn_transf_matrix33(String cartn_transf_matrix33) {
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Cartn_transf_matrix33 = cartn_transf_matrix33;
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}
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/**
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* @return the cartn_transf_vector1
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*/
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public String getCartn_transf_vector1() {
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return Cartn_transf_vector1;
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}
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/**
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* @param cartn_transf_vector1 the cartn_transf_vector1 to set
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*/
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public void setCartn_transf_vector1(String cartn_transf_vector1) {
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Cartn_transf_vector1 = cartn_transf_vector1;
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}
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/**
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* @return the cartn_transf_vector2
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*/
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public String getCartn_transf_vector2() {
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return Cartn_transf_vector2;
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}
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/**
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* @param cartn_transf_vector2 the cartn_transf_vector2 to set
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*/
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public void setCartn_transf_vector2(String cartn_transf_vector2) {
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Cartn_transf_vector2 = cartn_transf_vector2;
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}
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/**
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* @return the cartn_transf_vector3
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*/
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public String getCartn_transf_vector3() {
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return Cartn_transf_vector3;
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}
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/**
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* @param cartn_transf_vector3 the cartn_transf_vector3 to set
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*/
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public void setCartn_transf_vector3(String cartn_transf_vector3) {
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Cartn_transf_vector3 = cartn_transf_vector3;
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}
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}

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