Making tests less verbose

josemduarte · josemduarte · commit 0855c3de770c · 2015-07-28T09:45:08.000+02:00
diff --git a/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/PeptidePropertiesImplTest.java b/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/PeptidePropertiesImplTest.java
@@ -342,13 +342,13 @@ public void testNetCharge(){
 				/*"U",*/"V","W",/*"X",*/"Y"/*,"Z"*/};
 		for (String aa : alpha) {
 			String p = String.format("AA%sAA", aa);
-			logger.info(p);
-			logger.info("pH\tInnovagen\tExpasy\tdiff");
+			logger.debug(p);
+			logger.debug("pH\tInnovagen\tExpasy\tdiff");
 			for ( int i = 1; i < 15; i++) {
 				double phPoint = (new Double(i)).doubleValue();
 				double chrgInnovagen = PeptideProperties.getNetCharge(p,false,phPoint);
 				double chrgExpasy = PeptideProperties.getNetCharge(p,true,phPoint);
-				logger.info(String.format("%2.1f\t%2.2f\t%2.2f\t%2.2f", phPoint, chrgInnovagen, 
+				logger.debug(String.format("%2.1f\t%2.2f\t%2.2f\t%2.2f", phPoint, chrgInnovagen, 
 						chrgExpasy, chrgInnovagen - chrgExpasy));
 			}
 		}
diff --git a/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/AminoAcidTest.java b/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/AminoAcidTest.java
@@ -21,7 +21,6 @@
 package org.biojava.nbio.aaproperties.xml;
 
 import org.biojava.nbio.aaproperties.PeptideProperties;
-import org.biojava.nbio.aaproperties.xml.*;
 import org.junit.Test;
 
 import javax.xml.bind.JAXBContext;
diff --git a/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/ElementTest.java b/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/ElementTest.java
@@ -56,7 +56,7 @@ public void readXml() throws JAXBException, IOException{
 		Unmarshaller u = jc.createUnmarshaller();
 		iTable = (ElementTable)u.unmarshal(new FileInputStream("./src/main/resources/ElementMass.xml" ) );
 		for(Element e:iTable.getElement()){
-			logger.info("Element: {}", e);
+			logger.debug("Element: {}", e);
 		}
 	}
 	
@@ -774,7 +774,7 @@ public void generateXml() throws JAXBException, IOException {
 		// marshall the object to XML
 		marshaller.marshal(iTable, sw);
 		// print it out for this example
-		logger.info("Marshal to file: {}", sw.toString());
+		logger.debug("Marshal to file: {}", sw.toString());
 		File outputFile = new File(System.getProperty("java.io.tmpdir"),"ElementMass.xml");
 		outputFile.deleteOnExit();
 		BufferedWriter output = new BufferedWriter(new FileWriter(outputFile));
diff --git a/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/GenerateJavaCodesFromTextTest.java b/biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/xml/GenerateJavaCodesFromTextTest.java
@@ -20,7 +20,7 @@
  */
 package org.biojava.nbio.aaproperties.xml;
 
-import org.junit.Test;
+//import org.junit.Test;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -39,7 +39,8 @@ public class GenerateJavaCodesFromTextTest {
 	/*
 	 * Generate java codes from two text files; Symbol2Name.txt and Symbol2Weight.txt
 	 */
-	@Test
+	// commenting out since there's no assertions here - JD 2015-07-28
+	//@Test 
 	public void generateCodes() throws IOException{
 		BufferedReader input = new BufferedReader(new FileReader("./src/test/resources/Symbol2Name.txt"));
 		Map<String, String> symbol2Name = new HashMap<String, String>();
