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Commits on Sep 8, 2017

• Fixing phosphosite urls and changing default url timeout to 30s

  josemduarte

  committed
  67ca7f2

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Commits on Nov 30, 2016

• moving to Java 7

  andreasprlic

  committed
  4ee39f8

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• now also accepting old header line

  andreasprlic

  committed
  8210484

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Commits on Nov 29, 2016

• fix for #610

  andreasprlic

  committed
  6f28672

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Commits on Aug 8, 2016

• new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

  andreasprlic

  committed
  46560c7

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Commits on Jun 10, 2016

• Merge pull request #502 from andreasprlic/master

  Show description for 3509775
  josemduarte

  authored
  3509775

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• distance have to be looked up by element name, not atom name

  andreasprlic

  committed
  ad192d9

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Commits on Jun 9, 2016

• Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

  andreasprlic

  committed
  b39840a

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Commits on Jun 5, 2016

• squid:S2131 - Primitives should not be boxed just for String conversion

  

  Mohamed Ezzat

  committed
  fa52fd8

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Commits on Jun 1, 2016

• Allowing detection of PTMs that interact with Terbium, as reported by @epeisach . Also less verbose PTM junit test.

  andreasprlic

  committed
  c561c3a

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Commits on May 11, 2016

• Fixed modfinder tests

  josemduarte

  committed
  8459e6f

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Commits on May 4, 2016

• Fix the compile errors - mainly by changin "setChainId" "setChainName"

  abradle

  committed
  a4f8795

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Commits on Mar 9, 2016

• More whitespace fixes

  sbliven

  committed
  af59f90

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• Converting initial spaces to tabs.

  Show description for 2417c23
  sbliven

  committed
  2417c23

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• Remove trailing whitespace globally from .java files

  Show description for 809312e
  sbliven

  committed
  809312e

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

  Show description for 124269e
  sbliven

  committed
  124269e

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Commits on Jan 30, 2015

• Refactoring of all package names according to #245 #242 #240

  andreasprlic

  committed
  28f55cb

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Commits on Jan 29, 2015

• Ran Optimize Imports across the whole project.

  andreasprlic

  committed
  ac22449

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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
  c0b168f

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