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onbiojava-5.3.0

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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

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• Remove trailing spaces from java files

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  sbliven

  committed
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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

  committed
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Commits on Mar 14, 2018

• Add license to all files

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  sbliven

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Commits on Mar 7, 2018

• Unneeded imports

  josemduarte

  committed
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• Merging sequencing module into genome module as per #536

  josemduarte

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Commits on Aug 15, 2017

• improvements

  valasatava

  committed
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• Setter for chromosome coordinate systems: 0-based, 1-based

  valasatava

  committed
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• unit test fix

  valasatava

  committed
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• CDS length calculation bug fix

  valasatava

  committed
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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
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Commits on Apr 7, 2017

• Get CDS ranges patch

  valasatava

  committed
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Commits on Feb 24, 2017

• Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

  

  Yana Valasatava

  committed
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• Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
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Commits on Feb 23, 2017

• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  committed
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Commits on Aug 28, 2016

• Merge pull request #567 from andviane/master

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  josemduarte

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Commits on Aug 25, 2016

• More tests for issue #355

  andviane

  committed
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• Pulling in the @josemduarte test case for issue #355

  andviane

  committed
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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
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• setting default log level to warn

  andreasprlic

  committed
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Commits on Jul 27, 2016

• #534 addressing @joseduarte 's comments

  andreasprlic

  committed
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Commits on Jul 26, 2016

• Merge branch 'master' of github.com:andreasprlic/biojava

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  andreasprlic

  committed
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• adding a unit test for checking genomic ranges to CDS mapping tools

  andreasprlic

  committed
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Commits on Mar 9, 2016

• Converting initial spaces to tabs.

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  sbliven

  committed
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• Removing template messages

  sbliven

  committed
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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
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• Running addlicense.sh

  sbliven

  committed
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Commits on Dec 16, 2015

• New test and implementing a proper equals for Location

  josemduarte

  committed
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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

  committed
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Commits on Jul 15, 2015

• Patched to allow tests to be completed on windows. It was due to the test resource included that was built on linux and was not binary comparable to the one obtained at runtime in windows.

  

  pavanpa

  committed
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Commits on Jan 30, 2015

• Refactoring of all package names according to #245 #242 #240

  andreasprlic

  committed
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Commits on Jan 29, 2015

• Ran Optimize Imports across the whole project.

  andreasprlic

  committed
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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
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