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onbiojava-5.2.0

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Commits on Jan 3, 2019

• [maven-release-plugin] prepare release biojava-5.2.0

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• Merge pull request #821 from sbliven/spacestotabs

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• Merge pull request #820 from josemduarte/asaCalcPerformance

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• Should be private

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• Manually fix cases of space indentation identation found by

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• Automatically convert spaces to tabs

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• Remove trailing spaces from java files

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• Docs

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Commits on Jan 2, 2019

• Docs

  josemduarte

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• Logging and cleanup

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• Run development/addlicense.sh

  sbliven

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• Fix test failures from merge

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• Logging, docs and some minimal optimization

  josemduarte

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• Fix compilation errors from merge

  sbliven

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• Merge branch 'bugfixes-4.2'

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• Tidying up

  josemduarte

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• Efficient neighbor index finding with SH

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• Doing all neighbor indices upfront

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• A test, demoing that SH actually performs much worse

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• Supporting neighbors with and without SH

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• Neighbor indices now uses spatial hashing

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Commits on Jan 1, 2019

• Fix #817 NullPointerException

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• Quick fix of #816, following 'users should create models'

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Commits on Dec 29, 2018

• Finish previous hasty commit, adding RotationAxis methods

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• Add RotationAxis.rotationAngle methods

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Commits on Dec 14, 2018

• Fixing genbank proxy tests, genbank's efetch are limiting rate of requests now

  josemduarte

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Commits on Sep 28, 2018

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-5.1.1

  josemduarte

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Commits on Sep 26, 2018

• Merge pull request #802 from josemduarte/opIdsForSymmetry

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• Merge pull request #806 from josemduarte/asaCalcPerformance

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Commits on Sep 24, 2018

• Docs

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Commits on Sep 7, 2018

• Explicit jaxb dependencies so that biojava can compile/run in all jdks up to 11

  josemduarte

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• Make BioJava compile under java9

  

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• Cleanup

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Commits on Sep 6, 2018

• Using raw arrays for neighbor indices

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