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onbiojava-5.2.0

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Commits on Jan 3, 2019

• Manually fix cases of space indentation identation found by

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  sbliven

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• Automatically convert spaces to tabs

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  sbliven

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• Remove trailing spaces from java files

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  sbliven

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Commits on Jan 2, 2019

• Merge branch 'bugfixes-4.2'

  sbliven

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Commits on Mar 14, 2018

• Merge pull request #749 from josemduarte/removeV4deprecations

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  josemduarte

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• Add license to all files

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  sbliven

  committed
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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
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Commits on Mar 9, 2018

• Added moved note and cleaned up unused variable and some docs

  josemduarte

  committed
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Commits on Mar 7, 2018

• Merging sequencing module into genome module as per #536

  josemduarte

  committed
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Commits on Oct 3, 2017

• Updating genenames.org url to https

  josemduarte

  committed
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• Updating genenames.org url to https

  josemduarte

  committed
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Commits on Aug 15, 2017

• improvements

  valasatava

  committed
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• Setter for chromosome coordinate systems: 0-based, 1-based

  valasatava

  committed
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• CDS length calculation bug fix

  valasatava

  committed
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Commits on Apr 11, 2017

• Merge branch 'master' of https://github.com/valasatava/biojava

  valasatava

  committed
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Commits on Apr 7, 2017

• Work with assemble hg19 or hg37 keyword

  valasatava

  committed
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• Get CDS ranges patch

  valasatava

  committed
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Commits on Apr 5, 2017

• Get CDS ranges patch

  valasatava

  committed
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Commits on Apr 4, 2017

• TwoBitFile geneAssembly fix

  valasatava

  committed
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• A class to download .2bit file

  valasatava

  committed
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• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

  committed
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Commits on Apr 3, 2017

• proxy for convertDNAtoProteinSequence

  valasatava

  committed
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Commits on Mar 28, 2017

• .2bit parser facade added

  valasatava

  committed
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Commits on Mar 23, 2017

• Fix for orientation value: compare to Character, not to String

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  Yana Valasatava

  committed
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Commits on Mar 21, 2017

• Changes required for Extracting protein sequence for genetic positions #642 pull request

  

  Yana Valasatava

  committed
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Commits on Mar 20, 2017

• Class to extract protein sequence from genetic positions

  

  Yana Valasatava

  committed
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Commits on Mar 7, 2017

• Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  authored and

  josemduarte

  committed
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• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  authored and

  josemduarte

  committed
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Commits on Feb 24, 2017

• Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
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Commits on Feb 23, 2017

• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  committed
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Commits on Sep 21, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  committed
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• tiny javadoc improvements

  andreasprlic

  committed
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Commits on Sep 3, 2016

• More tests for issue #355

  

  andviane

  authored and

  josemduarte

  committed
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• Cleanup

  

  andviane

  authored and

  josemduarte

  committed
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• Fix 355

  

  andviane

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  josemduarte

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