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Commits on Nov 9, 2016

• Fix #596. Remove test for GenBank identifier parsing

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

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• setting default log level to warn

  andreasprlic

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• making output less verbose

  andreasprlic

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Commits on Aug 16, 2016

• updating to latest version of Cobertura tests. Now can successfully run locally.

  andreasprlic

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Commits on Jul 1, 2016

• Merge branch 'master' of github.com:biojava/biojava

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Commits on Jun 30, 2016

• #505 switching to https for all NCBI utils traffic.

  andreasprlic

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Commits on Jun 27, 2016

• Normalize percentage of identity by the length without gaps #521

  lafita

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Commits on Jun 24, 2016

• Implement tests for new utility methods in sequence objects #491

  lafita

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Commits on Mar 9, 2016

• Removing unnecessary casts

  sbliven

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• Removing unused imports

  sbliven

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• Converting initial spaces to tabs.

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  sbliven

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• Removing template messages

  sbliven

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• Remove trailing whitespace globally from .java files

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  sbliven

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• Running addlicense.sh

  sbliven

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Commits on Jan 26, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

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Commits on Jan 25, 2016

• getting Junit test to work on installations that have empty spaces in directory names

  andreasprlic

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Commits on Jan 11, 2016

• Merge branch 'pr/38'

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  emckee2006

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• Change AbstractFeature Qualifiers to a key:Array from key:value #302

  emckee2006

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Commits on Dec 5, 2015

• test case for #344

  andreasprlic

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Commits on Dec 3, 2015

• Fixing some minor warnings

  sbliven

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Commits on Dec 1, 2015

• Adding biojava license statements

  sbliven

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Commits on Nov 12, 2015

• Fixing broken path

  josemduarte

  committed
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• Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'

  josemduarte

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Commits on Nov 1, 2015

• Increased type checking.

  paolopavan

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Commits on Oct 9, 2015

• Refactoring proposed by Jose Manuel Duarte to separate this module from the old implementation in org.biojava.nbio.genome.query.BlastXMLQuery.

  paolopavan

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

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Commits on Oct 5, 2015

• Change in the way equals() is evaluated for Results, Hits, Hsps.Modified tests accordingly.

  paolopavan

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Commits on Sep 28, 2015

• Tests enhancement.

  paolopavan

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Commits on Sep 24, 2015

• Better exception handling.

  paolopavan

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Commits on Sep 16, 2015

• Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.

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  paolopavan

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Commits on Sep 9, 2015

• Deleted test files that can be delegated to superclass

  paolopavan

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• Comments and credits.

  

  paolopavan

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  unknown

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Commits on Aug 21, 2015

• Further tests refinements.

  paolopavan

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Commits on Jul 31, 2015

• Completed procedure for SearchIO constructor with Factory guess. This will allow auto selection of the appropriate parser based on file extension. Tests added.

  paolopavan

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