Use default file format (MMTF) for QuatSymmetry test and demo

lafita · lafita · commit ad910d5dceea · 2016-06-17T16:02:29.000+02:00
diff --git a/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java b/biojava-structure-gui/src/main/java/demo/DemoOrientBioAssembly.java
@@ -47,7 +47,7 @@ public static void main(String[] args){
 
 		//String[] pdbIDs = new String[]{"4HHB","4AQ5","1LTI","1STP","4F88","2W6E","2LXC","3OE7","4INU","4D8s","4EAR","4IYQ","3ZKR"};
 
-		String[] pdbIDs = new String[]{"4x2s"};
+		String[] pdbIDs = new String[]{"4hhb"};
 
 		int bioAssemblyNr = 1;
 
@@ -218,7 +218,7 @@ private static void showResults(Structure s, String title,
 	private static Structure  readStructure(String pdbId, int bioAssemblyId) {
 		// initialize the PDB_DIR env variable
 		AtomCache cache = new AtomCache();
-		cache.setUseMmCif(true);
+		//cache.setUseMmCif(true);
 
 		FileParsingParameters params = new FileParsingParameters();
 		params.setParseCAOnly(true);
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/symmetry/core/TestQuatSymmetryDetection.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/symmetry/core/TestQuatSymmetryDetection.java
@@ -50,7 +50,6 @@ public void test1b4c() throws Exception {
 		params.setParseBioAssembly(true);
 		params.setAlignSeqRes(true);
 		AtomCache cache = new AtomCache();
-		cache.setUseMmCif(true);
 		cache.setFileParsingParams(params);
 		StructureIO.setAtomCache(cache);
 		Structure pdb = StructureIO.getStructure("1b4c");
@@ -73,7 +72,6 @@ public void test4hhb() throws Exception {
 		params.setAlignSeqRes(true);
 		AtomCache cache = new AtomCache();
 		cache.setFileParsingParams(params);
-		cache.setUseMmCif(true);
 		StructureIO.setAtomCache(cache);
 		Structure pdb = StructureIO.getStructure("4hhb");
 		String[] symmetries = getSymmetry(pdb, 1);
@@ -94,7 +92,6 @@ public void test4p2c() throws IOException, StructureException {
 		params.setAlignSeqRes(true);
 		AtomCache cache = new AtomCache();
 		cache.setFileParsingParams(params);
-		cache.setUseMmCif(true);
 		StructureIO.setAtomCache(cache);
 		Structure pdb = StructureIO.getStructure("4p2c");
 		String[] symmetries = getSymmetry(pdb, 1);
