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BondFeature.gb
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183 lines (181 loc) · 8.91 KB
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LOCUS NP_000257 133 aa linear PRI 27-MAR-2008
DEFINITION norrin [Homo sapiens].
ACCESSION NP_000257
VERSION NP_000257.1 GI:4557789
DBSOURCE REFSEQ: accession NM_000266.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (residues 1 to 133)
AUTHORS Lev,D., Weigl,Y., Hasan,M., Gak,E., Davidovich,M., Vinkler,C.,
Leshinsky-Silver,E., Lerman-Sagie,T. and Watemberg,N.
TITLE A novel missense mutation in the NDP gene in a child with Norrie
disease and severe neurological involvement including infantile
spasms
JOURNAL Am. J. Med. Genet. A 143 (9), 921-924 (2007)
PUBMED 17334993
REMARK GeneRIF: A novel missense mutation at position c.134T > A resulting
in amino acid change at codon V45E in Norrie disease with
neurological disorder and infantile spasms.
REFERENCE 2 (residues 1 to 133)
AUTHORS Kondo,H., Qin,M., Kusaka,S., Tahira,T., Hasebe,H., Hayashi,H.,
Uchio,E. and Hayashi,K.
TITLE Novel mutations in Norrie disease gene in Japanese patients with
Norrie disease and familial exudative vitreoretinopathy
JOURNAL Invest. Ophthalmol. Vis. Sci. 48 (3), 1276-1282 (2007)
PUBMED 17325173
REMARK GeneRIF: These observations indicate that mutations of the NDP gene
can cause ND(Norrie disease) and 6% of FEVR(familial exudative
vitreoretinopathy) cases in the Japanese population.
REFERENCE 3 (residues 1 to 133)
AUTHORS Smallwood,P.M., Williams,J., Xu,Q., Leahy,D.J. and Nathans,J.
TITLE Mutational analysis of Norrin-Frizzled4 recognition
JOURNAL J. Biol. Chem. 282 (6), 4057-4068 (2007)
PUBMED 17158104
REMARK GeneRIF: Norrin binds to the Frizzled4 cysteine-rich domain (CRD)
and does not detectably bind to 14 other mammalian Frizzled and
secreted Frizzled-related protein CRDs.
REFERENCE 4 (residues 1 to 133)
AUTHORS Wu,W.C., Drenser,K., Trese,M., Capone,A. Jr. and Dailey,W.
TITLE Retinal phenotype-genotype correlation of pediatric patients
expressing mutations in the Norrie disease gene
JOURNAL Arch. Ophthalmol. 125 (2), 225-230 (2007)
PUBMED 17296899
REMARK GeneRIF: Patients exhibiting severe retinal dysgenesis should be
suspected of carrying a mutation that disrupts the cysteine-knot
motif in the NDP gene.
REFERENCE 5 (residues 1 to 133)
AUTHORS Drenser,K.A., Dailey,W., Capone,A. and Trese,M.T.
TITLE Genetic evaluation to establish the diagnosis of X-linked familial
exudative vitreoretinopathy
JOURNAL Ophthalmic Genet. 27 (3), 75-78 (2006)
PUBMED 17050281
REMARK GeneRIF: We found genetic testing of NDP to be helpful in
confirming the diagnosis of X-linked FEVR (familial exudative
vitreoretinopathy) in male patients, especially when limited family
history was available.
REFERENCE 6 (sites)
AUTHORS Perez-Vilar,J. and Hill,R.L.
TITLE Norrie disease protein (norrin) forms disulfide-linked oligomers
associated with the extracellular matrix
JOURNAL J. Biol. Chem. 272 (52), 33410-33415 (1997)
PUBMED 9407136
REFERENCE 7 (residues 1 to 133)
AUTHORS Berger,W., van de Pol,D., Warburg,M., Gal,A.,
Bleeker-Wagemakers,L., de Silva,H., Meindl,A., Meitinger,T.,
Cremers,F. and Ropers,H.H.
TITLE Mutations in the candidate gene for Norrie disease
JOURNAL Hum. Mol. Genet. 1 (7), 461-465 (1992)
PUBMED 1307245
REMARK Review article
REFERENCE 8 (residues 1 to 133)
AUTHORS Meindl,A., Berger,W., Meitinger,T., van de Pol,D., Achatz,H.,
Dorner,C., Haasemann,M., Hellebrand,H., Gal,A., Cremers,F. et al.
TITLE Norrie disease is caused by mutations in an extracellular protein
resembling C-terminal globular domain of mucins
JOURNAL Nat. Genet. 2 (2), 139-143 (1992)
PUBMED 1303264
REFERENCE 9 (residues 1 to 133)
AUTHORS Berger,W., Meindl,A., van de Pol,T.J., Cremers,F.P., Ropers,H.H.,
Doerner,C., Monaco,A., Bergen,A.A., Lebo,R., Warburgh,M. et al.
TITLE Isolation of a candidate gene for Norrie disease by positional
cloning
JOURNAL Nat. Genet. 2 (1), 84 (1992)
PUBMED 1303256
REMARK Correction to:[Nat Genet. 1992 Jun;1(3):199-203. PMID: 1303235]
REFERENCE 10 (residues 1 to 133)
AUTHORS Chen,Z.Y., Hendriks,R.W., Jobling,M.A., Powell,J.F.,
Breakefield,X.O., Sims,K.B. and Craig,I.W.
TITLE Isolation and characterization of a candidate gene for Norrie
disease
JOURNAL Nat. Genet. 1 (3), 204-208 (1992)
PUBMED 1303236
REFERENCE 11 (residues 1 to 133)
AUTHORS Berger,W., Meindl,A., van de Pol,T.J., Cremers,F.P., Ropers,H.H.,
Doerner,C., Monaco,A., Bergen,A.A., Lebo,R., Warburg,M. et al.
TITLE Isolation of a candidate gene for Norrie disease by positional
cloning
JOURNAL Nat. Genet. 1 (3), 199-203 (1992)
PUBMED 1303235
REMARK Erratum:[Nat Genet. 1992 Sep;2(1):84. PMID: 1303256]
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL034370.1, X65882.1 and BE139596.1.
Summary: NDP is the genetic locus identified as harboring mutations
that result in Norrie disease. Norrie disease is a rare genetic
disorder characterized by bilateral congenital blindness that is
caused by a vascularized mass behind each lens due to a
maldeveloped retina (pseudoglioma).
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the
Entrez Gene record to access additional publications.
FEATURES Location/Qualifiers
source 1..133
/organism="Homo sapiens"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xp11.4"
Protein 1..133
/product="norrin"
/note="exudative vitreoretinopathy 2 (X-linked)"
/calculated_mol_wt=14912
variation 1
/replace="v"
/db_xref="dbSNP:28933685"
variation 23
/replace="e"
/db_xref="dbSNP:5952410"
Bond bond(39,96)
/bond_type="disulfide"
/experiment="experimental evidence, no additional details
recorded"
/note="disulfide bridge bond"
/citation=[6]
Region 43..129
/region_name="CT"
/note="C-terminal cystine knot-like domain (CTCK); The
structures of transforming growth factor-beta (TGFbeta),
nerve growth factor (NGF), platelet-derived growth factor
(PDGF) and gonadotropin all form 2 highly twisted
antiparallel pairs of beta-strands and con; smart00041"
/db_xref="CDD:47390"
Bond bond(55,110)
/bond_type="disulfide"
/experiment="experimental evidence, no additional details
recorded"
/note="disulfide bridge bond"
/citation=[6]
variation 64
/replace="m"
/db_xref="dbSNP:3177012"
Bond bond(65,126)
/bond_type="disulfide"
/experiment="experimental evidence, no additional details
recorded"
/note="disulfide bridge bond"
/citation=[6]
Bond bond(69,128)
/bond_type="disulfide"
/experiment="experimental evidence, no additional details
recorded"
/note="disulfide bridge bond"
/citation=[6]
variation 124
/replace="f"
/db_xref="dbSNP:28933684"
CDS 1..133
/gene="NDP"
/coded_by="NM_000266.2:503..904"
/db_xref="CCDS:CCDS14262.1"
/db_xref="GeneID:4693"
/db_xref="HGNC:7678"
/db_xref="HPRD:HPRD_02404"
/db_xref="MIM:300658"
ORIGIN
1 mrkhvlaasf smlsllvimg dtdsktdssf imdsdprrcm rhhyvdsish plykcsskmv
61 llarceghcs qasrseplvs fstvlkqpfr sschccrpqt sklkalrlrc sggmrltaty
121 ryilschcee cns
//