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Commits on Jul 15, 2013

• [maven-release-plugin] prepare for next development iteration

  

  Andreas Prlic

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• [maven-release-plugin] prepare release biojava-3.0.6

  

  Andreas Prlic

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Commits on Apr 25, 2013

• use jdk 1.6 @Overrides instead of /** {@inheritDoc} */ doc tags

  heuermh

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Commits on Apr 19, 2013

• add null check to sequence and quality lengths match

  heuermh

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• adding quality method to fastq variant

  heuermh

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• update guava dependency version to 14.0.1

  heuermh

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Commits on Nov 30, 2012

• [maven-release-plugin] prepare for next development iteration

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  andreasprlic

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• [maven-release-plugin] prepare release biojava-3.0.5

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  andreasprlic

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Commits on Nov 10, 2012

• should take distribution config from parent

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  andreasprlic

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• snapshot repository config was missing

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  andreasprlic

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Commits on Oct 25, 2012

• removing files added by mistake and adding them to svn:ignore

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  aalhossary

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• eclipse-specific settings, please undo what you find unnecessary!

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  aalhossary

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• adding .classpath and .project files to new modules

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  aalhossary

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Commits on May 22, 2012

• [maven-release-plugin] prepare for next development iteration

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  andreasprlic

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• [maven-release-plugin] prepare release biojava-3.0.4

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  andreasprlic

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Commits on Mar 28, 2012

• javadoc fixes, incorrect @param --> @throws

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  heuermh

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Commits on Mar 16, 2012

• [maven-release-plugin] prepare for next development iteration

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  andreasprlic

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• [maven-release-plugin] prepare release biojava-3.0.3

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  andreasprlic

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Commits on Mar 15, 2012

• artifactId should be biojava3-sequencing

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  heuermh

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Commits on Mar 14, 2012

• adding javadoc comments, increasing unit test coverage

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  heuermh

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Commits on Mar 13, 2012

• adding a few new untested utility methods for review

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  heuermh

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• moving parse and stream methods from AbstractFastqReader to FastqReader, since binary compatibility is not a concern for biojava3, where these are new APIs

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  heuermh

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• fix a few stragglers

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  heuermh

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• moving files to correct place, svn copy from biojava-legacy/trunk was incorrect

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  heuermh

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• refactoring package names, updating @since tags; will have to svn move files next, svn copied them to wrong place

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  heuermh

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• updating to version 3.0.3-SNAPSHOT

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  heuermh

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• re-merging src/test/java from biojava-legacy/trunk to biojava-live/trunk

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  heuermh

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• re-merging src/test/java from biojava-legacy/trunk to biojava-live/trunk

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  heuermh

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• re-merging src/main from biojava-legacy/trunk to biojava-live/trunk

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  heuermh

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• re-merging pom.xml from biojava-legacy/trunk to biojava-live/trunk

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  heuermh

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• re-adding biojava3-sequencing module to prepare for svn copy operations from biojava-legacy/trunk

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  heuermh

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Commits on Mar 12, 2012

• moved fastq classes from biojava3.sequencing.io.fastq to biojava3.genome.parsers.fastq

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  brandstaetter

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Commits on Feb 26, 2012

• implemented a new Fastq Reader/Writer for the new Illumina Fastq Formatting (according to Wikipedia it's version 1.8, new this month

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  brandstaetter

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Commits on Jan 13, 2012

• updating @since tags from 1.7.1 to 3.0.3, adding note about refactoring to package-info.java

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  heuermh

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• adding fastq package from biojava-legacy-trunk/sequencing, refactored to org.biojava3.sequencing.io.fastq package in biojava3-sequencing module

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  heuermh

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